Strain identifier

BacDive ID: 6738

Type strain: Yes

Species: Legionella birminghamensis

Strain Designation: 1407-AL-H

Strain history: CIP <- 1993, C. Tram, Inst. Pasteur, Paris, France <- ATCC <- H.W. Wilkinson: strain 1407-AL-H <- Univ. Alabama Sch. Med., USA

NCBI tax ID(s): 28083 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 7981

BacDive-ID: 6738

DSM-Number: 19232

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative

description: Legionella birminghamensis 1407-AL-H is a mesophilic, Gram-negative bacterium that was isolated from human lung biopsy.

NCBI tax id

  • NCBI tax id: 28083
  • Matching level: species

strain history

@refhistory
7981<- H. E. Müller <- ATCC <- H. W. Wilkinson; 1407-AL-H <- University of Alabama School of Medicine
67770GIFU 11749 <-- ATCC 43702 <-- H. W. Wilkinson 1407-AL-H <-- Univ. Alabama Sch. Med..
116821CIP <- 1993, C. Tram, Inst. Pasteur, Paris, France <- ATCC <- H.W. Wilkinson: strain 1407-AL-H <- Univ. Alabama Sch. Med., USA

doi: 10.13145/bacdive6738.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Legionellales
  • family: Legionellaceae
  • genus: Legionella
  • species: Legionella birminghamensis
  • full scientific name: Legionella birminghamensis Wilkinson et al. 1988

@ref: 7981

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Legionellales

family: Legionellaceae

genus: Legionella

species: Legionella birminghamensis

full scientific name: Legionella birminghamensis Wilkinson et al. 1988

strain designation: 1407-AL-H

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.998

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7981BCYE-AGAR (DSMZ Medium 585)yeshttps://mediadive.dsmz.de/medium/585Name: BCYE AGAR (DSMZ Medium 585) Composition: OXOID Legionella CYE-Agar base
40841MEDIUM 23 - for Afipia and LegionellayesDistilled water make up to (1000.000 ml);Legionella agar (37.000 g);Legionella - enrichment mixture (10.000 ml)
116821CIP Medium 23yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=23

culture temp

@refgrowthtypetemperaturerange
7981positivegrowth37mesophilic
40841positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.984

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
7981human lung biopsyAlabamaUSAUSANorth America
50488Human lung biopsyAlabamaUSAUSANorth America
67770Lung biopsyALUSAUSANorth America
116821Lung biopsyAlabamaUnited States of AmericaUSANorth America

isolation source categories

Cat1Cat2Cat3
#Infection#Patient#Biopsy
#Host#Human
#Host Body-Site#Oral cavity and airways#Lung

taxonmaps

  • @ref: 69479
  • File name: preview.99_6711.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_35;96_767;97_3891;98_4946;99_6711&stattab=map
  • Last taxonomy: Legionella birminghamensis subclade
  • 16S sequence: Z49717
  • Sequence Identity:
  • Total samples: 166
  • soil counts: 61
  • aquatic counts: 68
  • animal counts: 11
  • plant counts: 26

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
79812Risk group (German classification)
1168212Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Legionella birminghamensis strain MDC1589 16S ribosomal RNA gene, partial sequenceJF720359524ena28083
7981L.birminghamiensis gene for ribosomal RNA, small subunitZ497171467ena28083
67770Legionella birminghamensis JCM 7559 gene for 16S ribosomal RNA, partial sequenceLC5040381466ena28083

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Legionella birminghamensis 1407-AL-HGCA_900639775scaffoldncbi28083
66792Legionella birminghamensis strain CDC#1407-AL-1428083.5wgspatric28083
66792Legionella birminghamensis strain NCTC1243728083.7wgspatric28083
67770Legionella birminghamensis NCTC12437GCA_900452515contigncbi28083

GC content

@refGC-contentmethod
798142.9
6777042.9thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno81.078no
gram-positiveno98.309no
anaerobicno97.425no
aerobicno85.345no
halophileno84.076no
spore-formingno93.867no
thermophileno99.056yes
glucose-utilyes65.689no
motileyes83.198no
glucose-fermentno90.976no

External links

@ref: 7981

culture collection no.: DSM 19232, ATCC 43702, CIP 103871, CCUG 31233 A, JCM 7559, BCRC 17042, KCTC 12007, NCTC 12437

straininfo link

  • @ref: 76208
  • straininfo: 41995

literature

  • topic: Phylogeny
  • Pubmed-ID: 3320081
  • title: Legionella birminghamensis sp. nov. isolated from a cardiac transplant recipient.
  • authors: Wilkinson HW, Thacker WL, Benson RF, Polt SS, Brookings E, Mayberry WR, Brenner DJ, Gilley RG, Kirklin JK
  • journal: J Clin Microbiol
  • DOI: 10.1128/jcm.25.11.2120-2122.1987
  • year: 1987
  • mesh: Agglutination Tests, DNA, Bacterial/analysis, Fatty Acids/analysis, *Heart Transplantation, Humans, Immunosuppression Therapy, Legionella/analysis/*classification/growth & development/isolation & purification, Legionellosis/*microbiology, Lung/*microbiology, Male, Middle Aged
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7981Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19232)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19232
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40841Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15716
50488Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 31233 A)https://www.ccug.se/strain?id=31233
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
76208Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID41995.1StrainInfo: A central database for resolving microbial strain identifiers
116821Curators of the CIPCollection of Institut Pasteur (CIP 103871)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103871