Strain identifier
BacDive ID: 6737
Type strain: 
Species: Legionella impletisoli
Strain Designation: OA1-1
Strain history: H. Miyamoto OA1-1.
NCBI tax ID(s): 343510 (species)
version 8.1 (current version)
General
@ref: 7561
BacDive-ID: 6737
DSM-Number: 18493
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Legionella impletisoli OA1-1 is a mesophilic, Gram-negative bacterium that was isolated from soil contaminated with industrial wastes.
NCBI tax id
- NCBI tax id: 343510
- Matching level: species
strain history
| @ref | history |
|---|---|
| 7561 | <- H. Miyamoto; OA1-1 |
| 67770 | H. Miyamoto OA1-1. |
doi: 10.13145/bacdive6737.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Legionellales
- family: Legionellaceae
- genus: Legionella
- species: Legionella impletisoli
- full scientific name: Legionella impletisoli Kuroki et al. 2007
@ref: 7561
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Legionellales
family: Legionellaceae
genus: Legionella
species: Legionella impletisoli
full scientific name: Legionella impletisoli Kuroki et al. 2007
strain designation: OA1-1
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.984
Culture and growth conditions
culture medium
- @ref: 7561
- name: BCYE-AGAR (DSMZ Medium 585)
- growth: yes
- link: https://mediadive.dsmz.de/medium/585
- composition: Name: BCYE AGAR (DSMZ Medium 585) Composition: OXOID Legionella CYE-Agar base
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 7561 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.983 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 7561 | soil contaminated with industrial wastes | Osaka | Japan | JPN | Asia |
| 60663 | Landfill | Japan | JPN | Asia | |
| 67770 | Soil |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Contamination | |
| #Engineered | #Waste | #Industrial waste |
| #Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_179597.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_35;96_44477;97_86289;98_117192;99_179597&stattab=map
- Last taxonomy: Legionella
- 16S sequence: AB233209
- Sequence Identity:
- Total samples: 19
- soil counts: 8
- aquatic counts: 9
- animal counts: 2
Safety information
risk assessment
- @ref: 7561
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Legionella impletisoli strain MDC1581 16S ribosomal RNA gene, partial sequence | JF720363 | 524 | ena | 343510 |
| 7561 | Legionella impletisoli mip gene for macrophage infectivity potenciator, partial cds, strain: OA1-1 | AB233217 | 412 | ena | 343510 |
| 67770 | Legionella impletisoli gene for 16S rRNA, partial sequence, strain: OA1-1 | AB233209 | 1494 | ena | 343510 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Legionella impletisoli JCM 13919 | GCA_014646855 | scaffold | ncbi | 343510 |
| 66792 | Legionella impletisoli strain JCM 13919 | 343510.4 | wgs | patric | 343510 |
| 67770 | Legionella impletisoli OA1-1 | GCA_900639875 | contig | ncbi | 343510 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 7561 | 40.5 | |
| 67770 | 40.5 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 95.94 | no |
| gram-positive | no | 98.589 | no |
| anaerobic | no | 97.442 | no |
| aerobic | no | 91.015 | no |
| halophile | no | 75.993 | no |
| spore-forming | no | 95.212 | no |
| thermophile | no | 96.254 | yes |
| glucose-util | yes | 74.189 | no |
| motile | no | 67.672 | no |
| glucose-ferment | no | 88.868 | no |
External links
@ref: 7561
culture collection no.: CCUG 55597, DSM 18493, JCM 13919
straininfo link
- @ref: 76207
- straininfo: 309537
literature
- topic: Phylogeny
- Pubmed-ID: 17197147
- title: Legionella impletisoli sp. nov. and Legionella yabuuchiae sp. nov., isolated from soils contaminated with industrial wastes in Japan.
- authors: Kuroki H, Miyamoto H, Fukuda K, Iihara H, Kawamura Y, Ogawa M, Wang Y, Ezaki T, Taniguchi H
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2006.11.005
- year: 2007
- mesh: Acanthamoeba, Animals, Bacteriological Techniques/methods, Industrial Waste, Japan, Legionella/*classification/genetics/isolation & purification, Microbiological Techniques, Molecular Sequence Data, Nucleic Acid Hybridization, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Species Specificity
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 7561 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18493) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18493 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 60663 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 55597) | https://www.ccug.se/strain?id=55597 | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 76207 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID309537.1 | StrainInfo: A central database for resolving microbial strain identifiers |