Strain identifier

BacDive ID: 6729

Type strain: Yes

Species: Legionella longbeachae

Strain Designation: Long Beach 4

Culture col. no.: CCUG 46622, CIP 103880, DSM 10572, ATCC 33462, NCTC 11477

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General

@ref: 3979

BacDive-ID: 6729

DSM-Number: 10572

keywords: microaerophile, Bacteria, 16S sequence, genome sequence, mesophilic

description: Legionella longbeachae Long Beach 4 is a microaerophile, mesophilic bacterium that was isolated from human lung.

strain history: <- H.E. Müller <- ATCC <- R. M. McKinney, strain Long Beach 4

doi: 10.13145/bacdive6729.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Gammaproteobacteria
  • order: Legionellales
  • family: Legionellaceae
  • genus: Legionella
  • species: Legionella longbeachae
  • full scientific name: Legionella longbeachae McKinney et al. 1982

@ref: 3979

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Legionellales

family: Legionellaceae

genus: Legionella

species: Legionella longbeachae

full scientific name: Legionella longbeachae McKinney et al. 1982

strain designation: Long Beach 4

type strain: yes

Morphology

colony morphology

  • @ref: 3979
  • incubation period: 3-7 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3979BCYE-AGAR (DSMZ Medium 585), microaerophilic, needs high humidityyeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium585.pdf
40846MEDIUM 23 - for Afipia and LegionellayesDistilled water make up to (1000.000 ml);Legionella agar (37.000 g);Legionella - enrichment mixture (10.000 ml)

culture temp

@refgrowthtypetemperaturerange
3979positivegrowth37mesophilic
40846positivegrowth37mesophilic
57290positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
3979microaerophile
57290microaerophile

enzymes

@refvalueactivityec
3979catalase+1.11.1.6
3979cytochrome-c oxidase+1.9.3.1

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    57290C14:00.414
    57290C15:00.815
    57290C16:0416
    57290C17:00.617
    57290C14:0 ISO7.413.618
    57290C14:1 ω5c0.513.899
    57290C15:0 ANTEISO17.614.711
    57290C15:0 ISO0.314.621
    57290C15:1 ω6c2.214.856
    57290C16:0 iso23.315.626
    57290C16:1 ISO H0.315.461
    57290C16:1 ω5c2.715.908
    57290C16:1 ω7c23.715.819
    57290C17:0 anteiso5.316.722
    57290C17:0 CYCLO10.216.888
    57290C17:0 iso0.416.629
    57290C19:0 CYCLO ω9c0.518.87
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
3979human lungCaliforniaUSAUSANorth America
57290Human lung

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Organ#Lung

Safety information

risk assessment

  • @ref: 3979
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Legionella longbeachae strain ATCC 33462 16S ribosomal RNA gene, partial sequenceAY4447401466ena450
20218Legionella longbeachae strain MDC1575 16S ribosomal RNA gene, partial sequenceJF720398524ena450
20218Legionella longbeachae 16S rRNA sequenceM360291473ena450

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Legionella longbeachae B3526CHCGCA_008807315completencbi450
66792Legionella longbeachae FDAARGOS_201GCA_002073455completencbi450
66792Legionella longbeachae F1157CHCGCA_002113845completencbi450
66792Legionella longbeachae B41211CHCGCA_011465395completencbi450
66792Legionella longbeachae B1445CHCGCA_011465255completencbi450
66792Legionella longbeachae NCTC11477GCA_900461575contigncbi450
66792Legionella longbeachae NCTC11477GCA_004283175scaffoldncbi450
66792Legionella longbeachae strain B3526CHC450.88completepatric450
66792Legionella longbeachae strain F1157CHC450.25completepatric450
66792Legionella longbeachae strain F1157CHC450.83plasmidpatric450
66792Legionella longbeachae strain FDAARGOS_201450.24completepatric450
66792Legionella longbeachae strain NCTC11477450.87wgspatric450
66792Legionella longbeachae strain NCTC11477450.86wgspatric450

External links

@ref: 3979

culture collection no.: CCUG 46622, CIP 103880, DSM 10572, ATCC 33462, NCTC 11477

straininfo link

@refpassport
20218http://www.straininfo.net/strains/162085
20218http://www.straininfo.net/strains/109349
20218http://www.straininfo.net/strains/109351

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3979Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10572)https://www.dsmz.de/collection/catalogue/details/culture/DSM-10572
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40846Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15726
57290Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 46622)https://www.ccug.se/strain?id=46622
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)