Strain identifier
BacDive ID: 672
Type strain: 
Species: Metabacillus fastidiosus
Strain Designation: 1, 29-14, Delft
Strain history: <- LMD 29.14 <- L.E. den Dooren de Jong
NCBI tax ID(s): 1458 (species)
version 8.1 (current version)
General
@ref: 2067
BacDive-ID: 672
DSM-Number: 91
keywords: 16S sequence, Bacteria, mesophilic
description: Metabacillus fastidiosus 1 is a mesophilic bacterium that was isolated from garden soil.
NCBI tax id
- NCBI tax id: 1458
- Matching level: species
strain history
- @ref: 2067
- history: <- LMD 29.14 <- L.E. den Dooren de Jong
doi: 10.13145/bacdive672.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Metabacillus
- species: Metabacillus fastidiosus
- full scientific name: Metabacillus fastidiosus (den Dooren de Jong 1929) Patel and Gupta 2020
synonyms
- @ref: 20215
- synonym: Bacillus fastidiosus
@ref: 2067
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Metabacillus
species: Metabacillus fastidiosus
full scientific name: Metabacillus fastidiosus (den Dooren de Jong 1929) Patel and Gupta 2020
strain designation: 1, 29-14, Delft
type strain: yes
Culture and growth conditions
culture medium
- @ref: 2067
- name: ALLANTOIN MINERAL MEDIUM (DSMZ Medium 6)
- growth: yes
- link: https://mediadive.dsmz.de/medium/6
- composition: Name: ALLANTOIN MINERAL MEDIUM (DSMZ Medium 6) Composition: Agar 15.0 g/l Allantoin 2.0 g/l K2HPO4 0.8 g/l MgSO4 x 7 H2O 0.5 g/l KH2PO4 0.2 g/l CaCl2 x 2 H2O 0.05 g/l FeSO4 x 7 H2O 0.01 g/l MnSO4 x H2O 0.001 g/l Distilled water
culture temp
- @ref: 2067
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 2067
- sample type: garden soil
- country: Netherlands
- origin.country: NLD
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Engineered | #Agriculture | #Garden |
Safety information
risk assessment
- @ref: 2067
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | B.fastidiosus 16S ribosomal RNA | X60615 | 1428 | ena | 1458 |
| 20218 | Bacillus fastidiosus gene for 16S rRNA, partial sequence, strain: NBRC 101226 | AB681412 | 1475 | ena | 1458 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 2067 | 35.1 | thermal denaturation, midpoint method (Tm) |
| 2067 | 35.1 | Buoyant density centrifugation (BD) |
External links
@ref: 2067
culture collection no.: DSM 91, ATCC 29604, NCIB 11326
straininfo link
- @ref: 70347
- straininfo: 1117
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 16166719 | Bacillus herbersteinensis sp. nov. | Wieser M, Worliczek H, Kampfer P, Busse HJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.63660-0 | 2005 | Austria, Bacillus/chemistry/*classification/genetics/isolation & purification, Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Humans, Molecular Sequence Data, *Paintings, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity | Pathogenicity |
| Enzymology | 20530883 | Effects of modification of amino groups with poly(ethylene glycol) on a recombinant uricase from Bacillus fastidiosus. | Zhang C, Yang X, Feng J, Yuan Y, Li X, Bu Y, Xie Y, Yuan H, Liao F | Biosci Biotechnol Biochem | 10.1271/bbb.100080 | 2010 | Animals, Bacillus/*enzymology, Enzyme Activation, Enzyme Stability, Half-Life, Hydrogen-Ion Concentration, Male, Polyethylene Glycols/*chemistry, Rats, Recombinant Proteins/blood/*chemistry/*metabolism, Structure-Activity Relationship, Temperature, Urate Oxidase/blood/*chemistry/*metabolism | Metabolism |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 2067 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 91) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-91 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 70347 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID1117.1 | StrainInfo: A central database for resolving microbial strain identifiers |