Strain identifier

BacDive ID: 6710

Type strain: Yes

Species: Legionella dumoffii

Strain Designation: NY23, NY 23

Strain history: CIP <- 1993, C. Tram, Inst. Pasteur, Paris, France <- ATCC <- R.E. Weaver, CDC: strain NY 23

NCBI tax ID(s): 463 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 6915

BacDive-ID: 6710

DSM-Number: 17625

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative

description: Legionella dumoffii NY23 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from cooling tower.

NCBI tax id

  • NCBI tax id: 463
  • Matching level: species

strain history

@refhistory
6915<- H. E. Müller, Medizinal-Untersuchungsamt,Braunschweig, Braunschweig <- ATCC <- R. E. Weaver; NY23
118976CIP <- 1993, C. Tram, Inst. Pasteur, Paris, France <- ATCC <- R.E. Weaver, CDC: strain NY 23

doi: 10.13145/bacdive6710.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Legionellales
  • family: Legionellaceae
  • genus: Legionella
  • species: Legionella dumoffii
  • full scientific name: Legionella dumoffii Brenner et al. 1980

  • synonyms

    • @ref: 20215
    • synonym: Fluoribacter dumoffii

@ref: 6915

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Legionellales

family: Legionellaceae

genus: Legionella

species: Legionella dumoffii

full scientific name: Legionella dumoffii Brenner et al. 1980

strain designation: NY23, NY 23

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.999

colony morphology

  • @ref: 6915
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6915BCYE-AGAR (DSMZ Medium 585)yeshttps://mediadive.dsmz.de/medium/585Name: BCYE AGAR (DSMZ Medium 585) Composition: OXOID Legionella CYE-Agar base
38153MEDIUM 23 - for Afipia and LegionellayesDistilled water make up to (1000.000 ml);Legionella agar (37.000 g);Legionella - enrichment mixture (10.000 ml)
118976CIP Medium 23yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=23

culture temp

@refgrowthtypetemperaturerange
6915positivegrowth37mesophilic
38153positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 6915
  • oxygen tolerance: microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no99.951

enzymes

@refvalueactivityec
6915catalase+1.11.1.6
6915cytochrome-c oxidase-1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382alkaline phosphatase+3.1.3.1

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
6915-++/---+--------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
6915cooling towerNew YorkUSAUSANorth America
45616Water,cooling towerNY,New YorkUSAUSANorth America
118976Cooling towerNew YorkUnited States of AmericaUSANorth America

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Industrial
  • Cat3: #Cooling tower

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
69152Risk group (German classification)
1189761Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6915
  • description: L.dumoffii (ATCC 33279) gene for 16S rRNA
  • accession: X73405
  • length: 1467
  • database: ena
  • NCBI tax ID: 1094715

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Fluoribacter dumoffii NCTC11370GCA_900450695contigncbi463
66792Fluoribacter dumoffii NY 231094715.6plasmidpatric1094715
66792Fluoribacter dumoffii NY 231094715.7plasmidpatric1094715
66792Fluoribacter dumoffii NY 231094715.5wgspatric1094715
66792Fluoribacter dumoffii NY 231094715.3wgspatric1094715
66792Fluoribacter dumoffii strain NCTC11370463.7wgspatric463
66792Fluoribacter dumoffii NCTC 113702839406339draftimg463
66792Fluoribacter dumoffii NY 23, ATCC 332792547132117draftimg1094715

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes87.465no
flagellatedno68.32no
gram-positiveno98.593no
anaerobicno97.864yes
aerobicno91.645yes
halophileno89.519no
spore-formingno93.199no
glucose-utilyes63.643no
thermophileno98.554yes
glucose-fermentno88.458no

External links

@ref: 6915

culture collection no.: DSM 17625, ATCC 33279, CCUG 11881, CIP 103876, NCTC 11370

straininfo link

  • @ref: 76183
  • straininfo: 40425

Reference

@idauthorscataloguedoi/urltitle
6915Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17625)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17625
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
38153Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15721
45616Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 11881)https://www.ccug.se/strain?id=11881
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
76183Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID40425.1StrainInfo: A central database for resolving microbial strain identifiers
118976Curators of the CIPCollection of Institut Pasteur (CIP 103876)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103876