Strain identifier

BacDive ID: 6704

Type strain: Yes

Species: Lactobacillus brantae

Strain Designation: SL1108

Culture col. no.: DSM 23927, ATCC BAA 2142, LMG 26001

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General

@ref: 17310

BacDive-ID: 6704

DSM-Number: 23927

keywords: gram-positive, mesophilic, microaerophile, Bacteria, 16S sequence, genome sequence, rod-shaped

description: Lactobacillus brantae SL1108 is a microaerophile, mesophilic, gram-positive bacterium that was isolated from feces of Canada goose ( Branta canadensis.

strain history: <- D. V. Volokhov, FDA; SL1108

doi: 10.13145/bacdive6704.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/firmicutes
  • domain: Bacteria
  • phylum: Firmicutes
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Lacticaseibacillus
  • species: Lacticaseibacillus brantae
  • full scientific name: Lacticaseibacillus brantae (Volokhov et al. 2012) Zheng et al. 2020
  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus brantae

@ref: 17310

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lactobacillus

species: Lactobacillus brantae

full scientific name: Lactobacillus brantae Volokhov et al. 2012

strain designation: SL1108

type strain: yes

Morphology

cell morphology

  • @ref: 30345
  • gram stain: positive
  • cell length: 4 µm
  • cell width: 0.5 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 30345
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 17310
  • name: MRS MEDIUM (DSMZ Medium 11), microaerophilic
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium11.pdf

culture temp

@refgrowthtypetemperaturerange
17310positivegrowth37mesophilic
30345positivegrowth25-40

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
17310microaerophile
30345facultative anaerobe

spore formation

  • @ref: 30345
  • spore formation: no

halophily

  • @ref: 30345
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 2-4 %

murein

  • @ref: 17310
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3034528757fructose+carbon source
3034517234glucose+carbon source
3034537684mannose+carbon source
30345506227N-acetylglucosamine+carbon source

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
17310----------++++--------+-----+/------------+-+----+--

Isolation, sampling and environmental information

isolation

  • @ref: 17310
  • sample type: feces of Canada goose ( Branta canadensis
  • host species: Branta canadensis
  • geographic location: Maryland, Great Falls Park
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Host#Birds
#Host Body Product#Gastrointestinal tract#Feces (Stool)

Safety information

risk assessment

  • @ref: 17310
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
30345Lactobacillus saniviri strain DSM 24301 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceJN6447562250nuccore1293598
17310Lactobacillus brantae strain SL1108 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceHQ0228612246ena1423727

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactobacillus brantae DSM 23927GCA_001436115contigncbi1423727
66792Lactobacillus brantae DSM 239271423727.3wgspatric1423727

GC content

  • @ref: 17310
  • GC-content: 48.2

External links

@ref: 17310

culture collection no.: DSM 23927, ATCC BAA 2142, LMG 26001

straininfo link

@refpassport
20218http://www.straininfo.net/strains/873097
20218http://www.straininfo.net/strains/873096
20218http://www.straininfo.net/strains/855667

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
17310Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23927)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23927
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2668610.1099/ijs.0.033852-0
30345Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information26686
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)