Strain identifier

BacDive ID: 6704

Type strain: Yes

Species: Lacticaseibacillus brantae

Strain Designation: SL1108

Strain history: LMG 26001 <-- D. V. Volokhov; FDA, USA; SL1108.

NCBI tax ID(s): 1423727 (strain), 943673 (species)

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General

@ref: 17310

BacDive-ID: 6704

DSM-Number: 23927

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, rod-shaped

description: Lacticaseibacillus brantae SL1108 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from feces of Canada goose ( Branta canadensis.

NCBI tax id

NCBI tax idMatching level
943673species
1423727strain

strain history

@refhistory
17310<- D. V. Volokhov, FDA; SL1108
67770LMG 26001 <-- D. V. Volokhov; FDA, USA; SL1108.

doi: 10.13145/bacdive6704.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Lacticaseibacillus
  • species: Lacticaseibacillus brantae
  • full scientific name: Lacticaseibacillus brantae (Volokhov et al. 2012) Zheng et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus brantae

@ref: 17310

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lacticaseibacillus

species: Lacticaseibacillus brantae

full scientific name: Lacticaseibacillus brantae (Volokhov et al. 2012) Zheng et al. 2020

strain designation: SL1108

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
30345positive4 µm0.5 µmrod-shapedno
69480no97.932
69480positive100

pigmentation

  • @ref: 30345
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 17310
  • name: MRS MEDIUM (DSMZ Medium 11)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/11
  • composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
17310positivegrowth37mesophilic
30345positivegrowth25-40
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
17310microaerophile
30345facultative anaerobe

spore formation

@refspore formationconfidence
30345no
69481no100
69480no99.989

halophily

  • @ref: 30345
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 2-4 %

murein

  • @ref: 17310
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3034528757fructose+carbon source
3034517234glucose+carbon source
3034537684mannose+carbon source
30345506227N-acetylglucosamine+carbon source
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate+builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose+builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose+builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine+builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
17310----------++++--------+-----+/------------+-+----+--

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
17310feces of Canada goose ( Branta canadensisBranta canadensisMaryland, Great Falls ParkUSAUSANorth America
67770Faeces of Canada geese (Branta canadensis) in Great Falls ParkBranta canadensisMDUSAUSANorth America

isolation source categories

Cat1Cat2Cat3
#Host#Birds
#Host Body Product#Gastrointestinal tract#Feces (Stool)

Safety information

risk assessment

  • @ref: 17310
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17310
  • description: Lactobacillus brantae strain SL1108 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence
  • accession: HQ022861
  • length: 2246
  • database: ena
  • NCBI tax ID: 1423727

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactobacillus brantae DSM 239271423727.3wgspatric1423727
66792Lacticaseibacillus brantae DSM 239272660238290draftimg1423727
67770Lacticaseibacillus brantae DSM 23927GCA_001436115contigncbi1423727

GC content

@refGC-contentmethod
1731048.2
6777046.6-49.8high performance liquid chromatography (HPLC)
6777047.5genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno94.544yes
gram-positiveyes95.825yes
anaerobicno93.295no
halophileyes87.331no
spore-formingno96.119no
glucose-utilyes91.362yes
thermophileno98.922no
aerobicno96.114yes
flagellatedno98.083yes
glucose-fermentyes84.022no

External links

@ref: 17310

culture collection no.: DSM 23927, ATCC BAA 2142, LMG 26001, JCM 30914, KCTC 21030

straininfo link

  • @ref: 76178
  • straininfo: 370509

literature

  • topic: Phylogeny
  • Pubmed-ID: 22021580
  • title: Lactobacillus brantae sp. nov., isolated from faeces of Canada geese (Branta canadensis).
  • authors: Volokhov DV, Amselle M, Beck BJ, Popham DL, Whittaker P, Wang H, Kerrigan E, Chizhikov VE
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.033852-0
  • year: 2011
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, Carbohydrates/analysis, DNA, Bacterial/genetics, DNA, Ribosomal Spacer/genetics, Fatty Acids/analysis, Feces/microbiology, Geese/*microbiology, Genes, Bacterial, Genotype, Lactobacillus/*classification/genetics/isolation & purification, Molecular Sequence Data, Phenotype, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
17310Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23927)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23927
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30345Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2668628776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
76178Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID370509.1StrainInfo: A central database for resolving microbial strain identifiers