Strain identifier
BacDive ID: 6690
Type strain:
Species: Lactobacillus taiwanensis
Strain Designation: FI RDI 006
Strain history: CIP <- 2009, DSMZ
NCBI tax ID(s): 1423809 (strain), 508451 (species)
General
@ref: 15686
BacDive-ID: 6690
DSM-Number: 21401
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, rod-shaped
description: Lactobacillus taiwanensis FI RDI 006 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from silage cattle feed.
NCBI tax id
NCBI tax id | Matching level |
---|---|
508451 | species |
1423809 | strain |
strain history
@ref | history |
---|---|
37897 | 2009, DSMZ |
15686 | <- F.-L. Lee, FIRDI <- Y. Wu; FI RDI 006 |
67770 | BCRC 17755 <-- Y.-C. Wu FIRDI 006. |
123422 | CIP <- 2009, DSMZ |
doi: 10.13145/bacdive6690.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Lactobacillus
- species: Lactobacillus taiwanensis
- full scientific name: Lactobacillus taiwanensis Wang et al. 2009
@ref: 15686
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Lactobacillus
species: Lactobacillus taiwanensis
full scientific name: Lactobacillus taiwanensis Wang et al. 2009
strain designation: FI RDI 006
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility |
---|---|---|---|---|---|
29122 | positive | 11 µm | 0.75 µm | rod-shaped | no |
123422 | positive | rod-shaped | no |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
15686 | MRS MEDIUM (DSMZ Medium 11) | yes | https://mediadive.dsmz.de/medium/11 | Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water |
37897 | MEDIUM 20 - for Anaerobic bacteria | yes | Agar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml) | |
123422 | CIP Medium 20 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20 | |
123422 | CIP Medium 40 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
15686 | positive | growth | 37 | mesophilic |
29122 | positive | growth | 30-45 | |
29122 | positive | optimum | 37 | mesophilic |
37897 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
123422 | positive | growth | 15-45 |
culture pH
- @ref: 29122
- ability: positive
- type: growth
- pH: 4.0-8.0
- PH range: acidophile
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
15686 | microaerophile |
29122 | anaerobe |
123422 | facultative anaerobe |
spore formation
- @ref: 29122
- spore formation: no
halophily
- @ref: 29122
- salt: NaCl
- growth: positive
- tested relation: optimum
- concentration: 5 %
observation
- @ref: 29122
- observation: aggregates in chains
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
29122 | 28757 | fructose | + | carbon source |
29122 | 28260 | galactose | + | carbon source |
29122 | 17234 | glucose | + | carbon source |
29122 | 17716 | lactose | + | carbon source |
29122 | 17306 | maltose | + | carbon source |
29122 | 37684 | mannose | + | carbon source |
29122 | 17992 | sucrose | + | carbon source |
29122 | 27082 | trehalose | + | carbon source |
29122 | 4853 | esculin | + | hydrolysis |
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | 24265 | gluconate | + | builds acid from |
68371 | 18403 | L-arabitol | - | builds acid from |
68371 | 18333 | D-arabitol | - | builds acid from |
68371 | 18287 | L-fucose | - | builds acid from |
68371 | 28847 | D-fucose | - | builds acid from |
68371 | 16443 | D-tagatose | + | builds acid from |
68371 | 62318 | D-lyxose | - | builds acid from |
68371 | 32528 | turanose | + | builds acid from |
68371 | 28066 | gentiobiose | + | builds acid from |
68371 | 17151 | xylitol | - | builds acid from |
68371 | 28087 | glycogen | - | builds acid from |
68371 | 28017 | starch | + | builds acid from |
68371 | 16634 | raffinose | - | builds acid from |
68371 | 6731 | melezitose | + | builds acid from |
68371 | 15443 | inulin | - | builds acid from |
68371 | 27082 | trehalose | + | builds acid from |
68371 | 17992 | sucrose | + | builds acid from |
68371 | 28053 | melibiose | - | builds acid from |
68371 | 17716 | lactose | + | builds acid from |
68371 | 17306 | maltose | + | builds acid from |
68371 | 17057 | cellobiose | + | builds acid from |
68371 | 17814 | salicin | + | builds acid from |
68371 | 4853 | esculin | + | builds acid from |
68371 | 18305 | arbutin | + | builds acid from |
68371 | 27613 | amygdalin | + | builds acid from |
68371 | 59640 | N-acetylglucosamine | + | builds acid from |
68371 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
68371 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
68371 | 17924 | D-sorbitol | - | builds acid from |
68371 | 16899 | D-mannitol | + | builds acid from |
68371 | 17268 | myo-inositol | - | builds acid from |
68371 | 16813 | galactitol | - | builds acid from |
68371 | 62345 | L-rhamnose | - | builds acid from |
68371 | 17266 | L-sorbose | + | builds acid from |
68371 | 16024 | D-mannose | + | builds acid from |
68371 | 15824 | D-fructose | + | builds acid from |
68371 | 17634 | D-glucose | + | builds acid from |
68371 | 12936 | D-galactose | + | builds acid from |
68371 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
68371 | 15963 | ribitol | - | builds acid from |
68371 | 65328 | L-xylose | - | builds acid from |
68371 | 65327 | D-xylose | - | builds acid from |
68371 | 16988 | D-ribose | + | builds acid from |
68371 | 30849 | L-arabinose | - | builds acid from |
68371 | 17108 | D-arabinose | - | builds acid from |
68371 | 17113 | erythritol | - | builds acid from |
68371 | 17754 | glycerol | - | builds acid from |
123422 | 17632 | nitrate | - | reduction |
123422 | 16301 | nitrite | - | reduction |
123422 | 17632 | nitrate | + | respiration |
metabolite tests
- @ref: 123422
- Chebi-ID: 15688
- metabolite: acetoin
- voges-proskauer-test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | + | 3.2.1.31 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | + | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
123422 | oxidase | - | |
123422 | alcohol dehydrogenase | - | 1.1.1.1 |
123422 | catalase | - | 1.11.1.6 |
123422 | lysine decarboxylase | - | 4.1.1.18 |
123422 | ornithine decarboxylase | - | 4.1.1.17 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
123422 | - | + | + | + | - | + | + | - | - | - | + | + | - | + | + | + | + | - | - | - |
API 50CHac
@ref | Q | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
15686 | - | - | - | - | - | + | - | - | - | - | + | + | + | + | + | - | - | - | + | - | - | - | + | + | + | + | + | + | + | + | - | + | + | - | + | - | + | - | - | + | + | - | + | - | - | - | - | + | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | isolation date |
---|---|---|---|---|---|---|
15686 | silage cattle feed | Miaoli, Jhunan | Taiwan | TWN | Asia | |
67770 | Silage cattle feed | Taiwan | TWN | Asia | ||
123422 | Silage cattle feed | Taiwan | TWN | Asia | 2006 |
isolation source categories
- Cat1: #Host
- Cat2: #Plants
- Cat3: #Herbaceous plants (Grass,Crops)
taxonmaps
- @ref: 69479
- File name: preview.99_840.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_46;96_506;97_581;98_668;99_840&stattab=map
- Last taxonomy: Lactobacillus
- 16S sequence: LC521984
- Sequence Identity:
- Total samples: 185237
- soil counts: 4782
- aquatic counts: 5652
- animal counts: 173268
- plant counts: 1535
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
15686 | 1 | Risk group (German classification) |
123422 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Lactobacillus taiwanensis partial 16S rRNA gene, type strain CIP 110030T | HE573918 | 1509 | ena | 508451 |
15686 | Lactobacillus taiwanensis strain BCRC 17755 16S ribosomal RNA gene, partial sequence | EU487512 | 1526 | ena | 508451 |
67770 | Lactobacillus taiwanensis JCM 18086 gene for 16S rRNA, partial sequence | LC521984 | 1506 | ena | 508451 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Lactobacillus taiwanensis DSM 21401 | 1423809.3 | wgs | patric | 1423809 |
66792 | Lactobacillus taiwanensis DSM 21401 | 2660238553 | draft | img | 1423809 |
67770 | Lactobacillus taiwanensis DSM 21401 | GCA_001436695 | scaffold | ncbi | 1423809 |
GC content
@ref | GC-content | method |
---|---|---|
15686 | 35.8 | |
67770 | 35.8 | high performance liquid chromatography (HPLC) |
67770 | 34 | genome sequence analysis |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 96.136 | yes |
gram-positive | yes | 95.928 | no |
anaerobic | no | 65.044 | no |
halophile | yes | 85.143 | no |
spore-forming | no | 94.961 | no |
thermophile | no | 99.79 | yes |
glucose-util | yes | 91.112 | yes |
aerobic | no | 97.511 | no |
flagellated | no | 98.045 | no |
glucose-ferment | yes | 91.397 | no |
External links
@ref: 15686
culture collection no.: DSM 21401, BCRC 17755, CIP 110030, JCM 18086
straininfo link
- @ref: 76164
- straininfo: 363648
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 19605711 | Lactobacillus taiwanensis sp. nov., isolated from silage. | Wang LT, Kuo HP, Wu YC, Tai CJ, Lee FL | Int J Syst Evol Microbiol | 10.1099/ijs.0.006783-0 | 2009 | Anaerobiosis, Bacterial Proteins/genetics, Bacterial Typing Techniques, Catalase/metabolism, Cluster Analysis, DNA Gyrase/genetics, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Lactobacillus/*classification/genetics/*isolation & purification/physiology, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Silage/*microbiology | Genetics |
Pathogenicity | 26687459 | Expression of FABP4, adipsin and adiponectin in Paneth cells is modulated by gut Lactobacillus. | Su X, Yan H, Huang Y, Yun H, Zeng B, Wang E, Liu Y, Zhang Y, Liu F, Che Y, Zhang Z, Yang R | Sci Rep | 10.1038/srep18588 | 2015 | Adiponectin/*biosynthesis/genetics, Animals, Complement Factor D/*biosynthesis/genetics, Fatty Acid-Binding Proteins/*biosynthesis/genetics, Feces, Gastrointestinal Microbiome/*genetics, Gene Expression Regulation/genetics, Humans, Lactobacillus/*metabolism, Mice, NF-kappa B/biosynthesis, Paneth Cells/metabolism/pathology, TNF Receptor-Associated Factor 2/genetics, TNF Receptor-Associated Factor 6/genetics | Metabolism |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed | ID_cross_reference |
---|---|---|---|---|---|---|---|
15686 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21401) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21401 | ||||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | ||
29122 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28776041 | 25548 | ||
37897 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/7842 | |||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||||
68371 | Automatically annotated from API 50CH acid | ||||||
68382 | Automatically annotated from API zym | ||||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | ||||
76164 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID363648.1 | StrainInfo: A central database for resolving microbial strain identifiers | ||||
123422 | Curators of the CIP | Collection of Institut Pasteur (CIP 110030) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110030 |