Strain identifier

BacDive ID: 6641

Type strain: Yes

Species: Liquorilactobacillus vini

Strain history: CIP <- 2006, CECT <- 2001, DSMZ <- O. Kandler <- P. Barre

NCBI tax ID(s): 1133569 (strain), 238015 (species)

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General

@ref: 8953

BacDive-ID: 6641

DSM-Number: 20605

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive

description: Liquorilactobacillus vini DSM 20605 is a facultative anaerobe, mesophilic, Gram-positive bacterium that was isolated from grape must, fermenting at high temperature.

NCBI tax id

NCBI tax idMatching level
238015species
1133569strain

strain history

@refhistory
8953<- O. Kandler <- P. Barre, Mont 4
67770CECT 5924 <-- DSM 20605 <-- O. Kandler <-- P. Barre strain Mont 4.
123847CIP <- 2006, CECT <- 2001, DSMZ <- O. Kandler <- P. Barre

doi: 10.13145/bacdive6641.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Liquorilactobacillus
  • species: Liquorilactobacillus vini
  • full scientific name: Liquorilactobacillus vini (Rodas et al. 2006) Zheng et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus vini

@ref: 8953

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Liquorilactobacillus

species: Liquorilactobacillus vini

full scientific name: Liquorilactobacillus vini (Rodas et al. 2006) Zheng et al. 2020

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480positive100
123847positiverod-shapedno

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8953MRS MEDIUM (DSMZ Medium 11)yeshttps://mediadive.dsmz.de/medium/11Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
40122MEDIUM 40- for Lactobacillus and LeuconostocyesDistilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
123847CIP Medium 40yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40

culture temp

@refgrowthtypetemperaturerange
8953positivegrowth37mesophilic
40122positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 123847
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.995

murein

  • @ref: 8953
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371arbutin-builds acid from18305
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
123847nitrate-reduction17632
123847nitrite-reduction16301

metabolite production

  • @ref: 123847
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase-3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)-
68382alkaline phosphatase+3.1.3.1
123847oxidase-
123847catalase-1.11.1.6
123847urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123847-+--------+----++---

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
8953----+-----++++--------++/--++++--++------+----------
123847---+------+++--------++--+++--++------+----------

Isolation, sampling and environmental information

isolation

@refsample type
8953grape must, fermenting at high temperature
67770Fermenting grape musts
123847Grape must ferment at high temperature

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Fermented
#Host Body-Site#Plant#Fruit (Seed)
#Engineered#Food production#Beverage

taxonmaps

  • @ref: 69479
  • File name: preview.99_5173.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_1207;97_3071;98_3855;99_5173&stattab=map
  • Last taxonomy: Liquorilactobacillus
  • 16S sequence: LC480810
  • Sequence Identity:
  • Total samples: 6197
  • soil counts: 156
  • aquatic counts: 230
  • animal counts: 5520
  • plant counts: 291

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
89531Risk group (German classification)
1238471Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Lactobacillus vini 16S rRNA gene, type strain CECT 5924TAJ5760091503ena1133569
67770Lactobacillus vini JCM 14280 gene for 16S ribosomal RNA, partial sequenceLC4808101495ena238015

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactobacillus vini DSM 206051133569.4wgspatric1133569
66792Lactobacillus vini DSM 206051133569.3wgspatric1133569
66792Liquorilactobacillus vini DSM 206052663763201draftimg1133569
66792Liquorilactobacillus vini DSM 206052548876815draftimg1133569
67770Liquorilactobacillus vini DSM 20605GCA_000255495contigncbi1133569
67770Liquorilactobacillus vini DSM 20605GCA_001435395scaffoldncbi1133569

GC content

@refGC-contentmethod
895339.4
6777037.5genome sequence analysis
6777039.4high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes55.839no
flagellatedno86.178no
gram-positiveyes95.672no
anaerobicno86.592no
aerobicno96.629no
halophileyes65.027no
spore-formingno92.19no
thermophileno95.525no
glucose-utilyes89.63no
glucose-fermentyes88.737no

External links

@ref: 8953

culture collection no.: DSM 20605, CECT 5924, Mont 4, JCM 14280, CIP 109261

straininfo link

  • @ref: 76115
  • straininfo: 49656

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16514019Lactobacillus vini sp. nov., a wine lactic acid bacterium homofermentative for pentoses.Rodas AM, Chenoll E, Macian MC, Ferrer S, Pardo I, Aznar RInt J Syst Evol Microbiol10.1099/ijs.0.63877-02006Fermentation, Genotype, Lactobacillus/*classification/genetics/metabolism, Pentoses/*metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Wine/*microbiologyGenetics
Phylogeny19625442Lactobacillus sucicola sp. nov., a motile lactic acid bacterium isolated from oak tree (Quercus sp.) sap.Irisawa T, Okada SInt J Syst Evol Microbiol10.1099/ijs.0.006478-02009DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Lactic Acid/*metabolism, Lactobacillus/classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phylogeny, Quercus/*microbiology, RNA, Ribosomal, 16S/geneticsMetabolism
Genetics22582376Genome sequences of the ethanol-tolerant Lactobacillus vini strains LMG 23202T and JP7.8.9.Luckwu de Lucena BT, Silva GG, Manoel Dos Santos B, Dias GM, Amaral GR, Moreira AP, de Morais Junior MA, Dutilh BE, Edwards RA, Balbino V, Thompson CC, Thompson FLJ Bacteriol10.1128/JB.00446-122012Base Sequence, Ethanol/*metabolism, Fermentation, *Genome, Bacterial, Lactobacillus/classification/*genetics/*isolation & purification/metabolism, Molecular Sequence Data, Vitis/metabolism/*microbiologyMetabolism
Phylogeny24899655Lactobacillus sicerae sp. nov., a lactic acid bacterium isolated from Spanish natural cider.Puertas AI, Arahal DR, Ibarburu I, Elizaquivel P, Aznar R, Duenas MTInt J Syst Evol Microbiol10.1099/ijs.0.059980-02014Bacterial Typing Techniques, Beverages/microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Food Microbiology, Lactic Acid, Lactobacillus/*classification/genetics/isolation & purification, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Random Amplified Polymorphic DNA Technique, Sequence Analysis, DNA, SpainBiotechnology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8953Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20605)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20605
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40122Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6982
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
76115Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49656.1StrainInfo: A central database for resolving microbial strain identifiers
123847Curators of the CIPCollection of Institut Pasteur (CIP 109261)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109261