Strain identifier

BacDive ID: 6626

Type strain: Yes

Species: Lactiplantibacillus argentoratensis

Strain history: CIP <- 2004, F. Bringel, CNRS-Univ. Louis Pasteur of Strasbourg, France: strain DKO22 <- D.K. Olukoya, Lagos, Nigeria

NCBI tax ID(s): 1423831 (strain), 271881 (species)

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General

@ref: 6403

BacDive-ID: 6626

DSM-Number: 16365

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, rod-shaped

description: Lactiplantibacillus argentoratensis DSM 16365 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from fermented cassava roots .

NCBI tax id

NCBI tax idMatching level
271881species
1423831strain

strain history

@refhistory
6403<- F. Bringel <- D.K. Olukoya, DKO 22, Lagos, Nigeria
67770CIP 108320 <-- F. Bringel DKO 22 <-- D. K. Olukoya DKO 22.
116494CIP <- 2004, F. Bringel, CNRS-Univ. Louis Pasteur of Strasbourg, France: strain DKO22 <- D.K. Olukoya, Lagos, Nigeria

doi: 10.13145/bacdive6626.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Lactiplantibacillus
  • species: Lactiplantibacillus argentoratensis
  • full scientific name: Lactiplantibacillus argentoratensis (Bringel et al. 2005) Liu and Gu 2020

  • synonyms

    @refsynonym
    20215Lactobacillus argentoratensis
    20215Lactobacillus plantarum subsp. argentoratensis
    20215Lactiplantibacillus plantarum subsp. argentoratensis

@ref: 6403

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lactiplantibacillus

species: Lactiplantibacillus argentoratensis

full scientific name: Lactiplantibacillus argentoratensis (Bringel et al. 2005) Liu and Gu 2020

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
116494positiverod-shapedno
125438positive93.216

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6403MRS MEDIUM (DSMZ Medium 11)yeshttps://mediadive.dsmz.de/medium/11Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
38269MEDIUM 40- for Lactobacillus and LeuconostocyesDistilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
116494CIP Medium 40yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40

culture temp

@refgrowthtypetemperature
6403positivegrowth30
38269positivegrowth30
58997positivegrowth37
67770positivegrowth30
116494positivegrowth15-37
116494nogrowth10
116494nogrowth45

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
6403microaerophile
58997anaerobe
116494facultative anaerobe
125439microaerophile91.6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11649417632nitrate-reduction
11649416301nitrite-reduction
11649417632nitrate+respiration
68371Potassium 5-ketogluconate-builds acid from
6837118305arbutin+builds acid from
6837127613amygdalin+builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate+builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose+builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose+builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose+builds acid from
6837128053melibiose+builds acid from
6837117716lactose+builds acid from
6837117306maltose+builds acid from
6837117057cellobiose+builds acid from
6837117814salicin+builds acid from
683714853esculin+builds acid from
6837159640N-acetylglucosamine+builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol+builds acid from
6837116899D-mannitol+builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose+builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from

antibiotic resistance

  • @ref: 116494
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite tests

  • @ref: 116494
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)-
116494oxidase-
116494alcohol dehydrogenase-1.1.1.1
116494catalase-1.11.1.6
116494lysine decarboxylase-4.1.1.18
116494ornithine decarboxylase-4.1.1.17
68382alpha-mannosidase-3.2.1.24
68382alkaline phosphatase-3.1.3.1

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116494-----+----++++-+++--

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
6403-----+----++++----++--+++++++++++--+---+-------+--
6403-----+----++++----++--+++++++++++--+---+-------+--
116494----+----++++----++--+++++++++++--+---+-------+--

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic locationisolation date
6403fermented cassava roots (fufu)NigeriaNGAAfrica
58997Sour cassava (fufu)NigeriaNGAAfrica
67770Vegetable matrices
116494Plant, Root of fermented maniocNigeriaNGAAfricaLagos1992

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production
#Host#Plants#Shrub (Scrub)
#Host Body-Site#Plant#Root (Rhizome)

taxonmaps

  • @ref: 69479
  • File name: preview.99_195.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_140;97_151;98_168;99_195&stattab=map
  • Last taxonomy: Lactobacillaceae
  • 16S sequence: LC258153
  • Sequence Identity:
  • Total samples: 38637
  • soil counts: 2696
  • aquatic counts: 4479
  • animal counts: 29069
  • plant counts: 2393

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
6403yes, in single cases1Risk group (German classification)
1164941Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
6403Lactobacillus plantarum subsp. argentoratensis partial 16S rRNA gene, type strain DK0 22TAJ6400781517nuccore271881
67770Lactobacillus plantarum subsp. argentoratensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 16169LC2581531432nuccore271881
124043Lactobacillus plantarum subsp. argentoratensis gene for 16S rRNA, partial sequence, strain: NBRC 106468.AB6260611492nuccore271881

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactiplantibacillus argentoratensis DSM 16365GCA_003641165completencbi271881
66792Lactobacillus plantarum subsp. argentoratensis DSM 163651423831.3wgspatric1423831
66792Lactobacillus plantarum subsp. argentoratensis strain DSM 16365271881.5completepatric271881
66792Lactobacillus plantarum subsp. argentoratensis strain NBRC 106468271881.7wgspatric271881
66792Lactiplantibacillus plantarum argentoratensis DSM 163652700989149draftimg1423831
66792Lactiplantibacillus plantarum argentoratensis DSM 163652902495512completeimg1423831
67770Lactiplantibacillus argentoratensis DSM 16365GCA_001435215scaffoldncbi1423831
66792Lactiplantibacillus argentoratensis NBRC 106468GCA_007991855contigncbi271881

GC content

  • @ref: 67770
  • GC-content: 45.3
  • method: genome sequence analysis

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes93.216no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no86.52no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no97.033no
125438spore-formingspore-formingAbility to form endo- or exosporesno81.554no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno97no
125438motile2+flagellatedAbility to perform flagellated movementno89no
125439BacteriaNetspore_formationAbility to form endo- or exosporesyes57.3
125439BacteriaNetmotilityAbility to perform movementyes54.8
125439BacteriaNetgram_stainReaction to gram-stainingpositive84.3
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthmicroaerophile91.6

External links

@ref: 6403

culture collection no.: DSM 16365, CIP 108320, CCUG 50787, DKO 22, JCM 16169, BCRC 17638, NBRC 106468, NRIC 0653

straininfo link

  • @ref: 76100
  • straininfo: 3348

literature

  • topic: Phylogeny
  • Pubmed-ID: 32250238
  • title: Proposal of Lactobacillus kosoi Chiou et al. 2018 as a later heterotypic synonym of Lactobacillus micheneri McFrederick et al. 2018, elevation of Lactobacillus plantarum subsp. argentoratensis to the species level as Lactobacillus argentoratensis sp. nov., and Lactobacillus zhaodongensis sp. nov., isolated from traditional Chinese pickle and the intestinal tract of a honey bee (Apis mellifera).
  • authors: Li TT, Liu DD, Fu ML, Gu CT
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.004141
  • year: 2020
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, Bees/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermented Foods/*microbiology, *Food Microbiology, Gastrointestinal Tract/microbiology, Genes, Bacterial, Lactobacillus/*classification/isolation & purification, Lactobacillus plantarum/classification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Biotechnology

Reference

@idauthorscataloguedoi/urltitle
6403Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16365)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16365
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
38269Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5930
58997Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 50787)https://www.ccug.se/strain?id=50787
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76100Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID3348.1StrainInfo: A central database for resolving microbial strain identifiers
116494Curators of the CIPCollection of Institut Pasteur (CIP 108320)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108320
124043Isabel Schober, Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1