Strain identifier
BacDive ID: 6626
Type strain:
Species: Lactiplantibacillus argentoratensis
Strain history: CIP <- 2004, F. Bringel, CNRS-Univ. Louis Pasteur of Strasbourg, France: strain DKO22 <- D.K. Olukoya, Lagos, Nigeria
NCBI tax ID(s): 1590 (species)
General
@ref: 6403
BacDive-ID: 6626
DSM-Number: 16365
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, human pathogen
description: Lactiplantibacillus argentoratensis DSM 16365 is a microaerophile, mesophilic human pathogen that was isolated from fermented cassava roots .
NCBI tax id
- NCBI tax id: 1590
- Matching level: species
strain history
@ref | history |
---|---|
6403 | <- F. Bringel <- D.K. Olukoya, DKO 22, Lagos, Nigeria |
67770 | CIP 108320 <-- F. Bringel DKO 22 <-- D. K. Olukoya DKO 22. |
116494 | CIP <- 2004, F. Bringel, CNRS-Univ. Louis Pasteur of Strasbourg, France: strain DKO22 <- D.K. Olukoya, Lagos, Nigeria |
doi: 10.13145/bacdive6626.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Lactiplantibacillus
- species: Lactiplantibacillus argentoratensis
- full scientific name: Lactiplantibacillus argentoratensis (Bringel et al. 2005) Liu and Gu 2020
synonyms
@ref synonym 20215 Lactiplantibacillus plantarum subsp. argentoratensis 20215 Lactobacillus argentoratensis 20215 Lactobacillus plantarum subsp. argentoratensis
@ref: 6403
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Lactiplantibacillus
species: Lactiplantibacillus argentoratensis
full scientific name: Lactiplantibacillus argentoratensis (Bringel et al. 2005) Liu and Gu 2020
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | no | 97.538 | ||
69480 | 100 | positive | ||
116494 | no | positive | rod-shaped |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
6403 | MRS MEDIUM (DSMZ Medium 11) | yes | https://mediadive.dsmz.de/medium/11 | Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water |
38269 | MEDIUM 40- for Lactobacillus and Leuconostoc | yes | Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g) | |
116494 | CIP Medium 40 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
6403 | positive | growth | 30 | mesophilic |
38269 | positive | growth | 30 | mesophilic |
58997 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
116494 | positive | growth | 15-37 | |
116494 | no | growth | 10 | psychrophilic |
116494 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
6403 | microaerophile |
58997 | anaerobe |
116494 | facultative anaerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.991 |
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | + | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | gentiobiose | + | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | raffinose | + | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | + | builds acid from | 27082 |
68371 | sucrose | + | builds acid from | 17992 |
68371 | melibiose | + | builds acid from | 28053 |
68371 | lactose | + | builds acid from | 17716 |
68371 | maltose | + | builds acid from | 17306 |
68371 | cellobiose | + | builds acid from | 17057 |
68371 | salicin | + | builds acid from | 17814 |
68371 | esculin | + | builds acid from | 4853 |
68371 | arbutin | + | builds acid from | 18305 |
68371 | amygdalin | + | builds acid from | 27613 |
68371 | N-acetylglucosamine | + | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | + | builds acid from | 17924 |
68371 | D-mannitol | + | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | + | builds acid from | 16024 |
68371 | D-fructose | + | builds acid from | 15824 |
68371 | D-glucose | + | builds acid from | 17634 |
68371 | D-galactose | + | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | - | builds acid from | 65327 |
68371 | D-ribose | + | builds acid from | 16988 |
68371 | L-arabinose | - | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | - | builds acid from | 17754 |
116494 | nitrate | - | reduction | 17632 |
116494 | nitrite | - | reduction | 16301 |
116494 | nitrate | + | respiration | 17632 |
antibiotic resistance
- @ref: 116494
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: yes
- is resistant: no
metabolite tests
- @ref: 116494
- Chebi-ID: 15688
- metabolite: acetoin
- voges-proskauer-test: +
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | alpha-galactosidase | + | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | - | |
68382 | esterase (C 4) | - | |
68382 | alkaline phosphatase | - | 3.1.3.1 |
116494 | oxidase | - | |
116494 | alcohol dehydrogenase | - | 1.1.1.1 |
116494 | catalase | - | 1.11.1.6 |
116494 | lysine decarboxylase | - | 4.1.1.18 |
116494 | ornithine decarboxylase | - | 4.1.1.17 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116494 | - | - | - | - | - | + | - | - | - | - | + | + | + | + | - | + | + | + | - | - |
API 50CHac
@ref | Q | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
6403 | - | - | - | - | - | + | - | - | - | - | + | + | + | + | - | - | - | - | + | + | - | - | + | + | + | + | + | + | + | + | + | + | + | - | - | + | - | - | - | + | - | - | - | - | - | - | - | + | - | - |
6403 | - | - | - | - | - | + | - | - | - | - | + | + | + | + | - | - | - | - | + | + | - | - | + | + | + | + | + | + | + | + | + | + | + | - | - | + | - | - | - | + | - | - | - | - | - | - | - | + | - | - |
116494 | - | - | - | - | + | - | - | - | - | + | + | + | + | - | - | - | - | + | + | - | - | + | + | + | + | + | + | + | + | + | + | + | - | - | + | - | - | - | + | - | - | - | - | - | - | - | + | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | geographic location | isolation date |
---|---|---|---|---|---|---|
6403 | fermented cassava roots (fufu) | Nigeria | NGA | Africa | ||
58997 | Sour cassava (fufu) | Nigeria | NGA | Africa | ||
67770 | Vegetable matrices | |||||
116494 | Plant, Root of fermented manioc | Nigeria | NGA | Africa | Lagos | 1992 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Food production | |
#Host | #Plants | #Shrub (Scrub) |
#Host Body-Site | #Plant | #Root (Rhizome) |
taxonmaps
- @ref: 69479
- File name: preview.99_195.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_140;97_151;98_168;99_195&stattab=map
- Last taxonomy: Lactobacillaceae
- 16S sequence: LC258153
- Sequence Identity:
- Total samples: 38637
- soil counts: 2696
- aquatic counts: 4479
- animal counts: 29069
- plant counts: 2393
Safety information
risk assessment
@ref | pathogenicity human | biosafety level | biosafety level comment |
---|---|---|---|
6403 | yes, in single cases | 1 | Risk group (German classification) |
116494 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
6403 | Lactobacillus plantarum subsp. argentoratensis partial 16S rRNA gene, type strain DK0 22T | AJ640078 | 1517 | ena | 271881 |
67770 | Lactobacillus plantarum subsp. argentoratensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 16169 | LC258153 | 1432 | ena | 271881 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Lactiplantibacillus argentoratensis DSM 16365 | GCA_003641165 | complete | ncbi | 271881 |
66792 | Lactobacillus plantarum subsp. argentoratensis DSM 16365 | 1423831.3 | wgs | patric | 1423831 |
66792 | Lactobacillus plantarum subsp. argentoratensis strain DSM 16365 | 271881.5 | complete | patric | 271881 |
66792 | Lactobacillus plantarum subsp. argentoratensis strain NBRC 106468 | 271881.7 | wgs | patric | 271881 |
66792 | Lactiplantibacillus plantarum argentoratensis DSM 16365 | 2700989149 | draft | img | 1423831 |
66792 | Lactiplantibacillus plantarum argentoratensis DSM 16365 | 2902495512 | complete | img | 1423831 |
67770 | Lactiplantibacillus argentoratensis DSM 16365 | GCA_001435215 | scaffold | ncbi | 1423831 |
66792 | Lactiplantibacillus argentoratensis NBRC 106468 | GCA_007991855 | contig | ncbi | 271881 |
GC content
- @ref: 67770
- GC-content: 45.3
- method: genome sequence analysis
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 95.437 | no |
flagellated | no | 96.844 | no |
gram-positive | yes | 97 | no |
anaerobic | no | 83.485 | no |
aerobic | no | 97.34 | yes |
halophile | yes | 82.652 | no |
spore-forming | no | 93.447 | no |
glucose-util | yes | 90.267 | no |
thermophile | no | 99.892 | no |
glucose-ferment | yes | 87.797 | no |
External links
@ref: 6403
culture collection no.: DSM 16365, CIP 108320, CCUG 50787, DKO 22, JCM 16169, BCRC 17638, NBRC 106468, NRIC 0653
straininfo link
- @ref: 76100
- straininfo: 3348
literature
- topic: Phylogeny
- Pubmed-ID: 32250238
- title: Proposal of Lactobacillus kosoi Chiou et al. 2018 as a later heterotypic synonym of Lactobacillus micheneri McFrederick et al. 2018, elevation of Lactobacillus plantarum subsp. argentoratensis to the species level as Lactobacillus argentoratensis sp. nov., and Lactobacillus zhaodongensis sp. nov., isolated from traditional Chinese pickle and the intestinal tract of a honey bee (Apis mellifera).
- authors: Li TT, Liu DD, Fu ML, Gu CT
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004141
- year: 2020
- mesh: Animals, Bacterial Typing Techniques, Base Composition, Bees/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermented Foods/*microbiology, *Food Microbiology, Gastrointestinal Tract/microbiology, Genes, Bacterial, Lactobacillus/*classification/isolation & purification, Lactobacillus plantarum/classification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Biotechnology
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
6403 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16365) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16365 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
38269 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/5930 | ||
58997 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 50787) | https://www.ccug.se/strain?id=50787 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
68371 | Automatically annotated from API 50CH acid | |||
68382 | Automatically annotated from API zym | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
76100 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID3348.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
116494 | Curators of the CIP | Collection of Institut Pasteur (CIP 108320) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108320 |