Strain identifier

BacDive ID: 6601

Type strain: Yes

Species: Furfurilactobacillus rossiae

Strain Designation: CS1

Strain history: CIP <- 2008, DSMZ <- A. Cosrsetii, Perugia Univ., Italy: strain CS1

NCBI tax ID(s): 1114972 (strain), 231049 (species)

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General

@ref: 6119

BacDive-ID: 6601

DSM-Number: 15814

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive, rod-shaped

description: Furfurilactobacillus rossiae CS1 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from wheat sourdough.

NCBI tax id

NCBI tax idMatching level
1114972strain
231049species

strain history

@refhistory
6119<- A. Corsetii; CS1
67770DSM 15814 <-- A. Corsetii CS1.
122267CIP <- 2008, DSMZ <- A. Cosrsetii, Perugia Univ., Italy: strain CS1

doi: 10.13145/bacdive6601.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Furfurilactobacillus
  • species: Furfurilactobacillus rossiae
  • full scientific name: Furfurilactobacillus rossiae (Corsetti et al. 2005) Zheng et al. 2020

  • synonyms

    @refsynonym
    20215Lactobacillus rossiae
    20215Lactobacillus rossii

@ref: 6119

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Furfurilactobacillus

species: Furfurilactobacillus rossiae

full scientific name: Furfurilactobacillus rossiae (Corsetti et al. 2005) Zheng et al. 2020

strain designation: CS1

type strain: yes

Morphology

cell morphology

  • @ref: 31220
  • gram stain: positive
  • cell length: 1.5 µm
  • cell width: 0.5 µm
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6119MRS MEDIUM (DSMZ Medium 11)yeshttps://mediadive.dsmz.de/medium/11Name: MRS MEDIUM (DSMZ Medium 11; with strain-specific modifications) Composition: Glucose 20.0 g/l Maltose 10.0 g/l Meat extract 10.0 g/l Casein peptone 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
37873MEDIUM 40- for Lactobacillus and LeuconostocyesDistilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
122267CIP Medium 40yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40

culture temp

@refgrowthtypetemperaturerange
6119positivegrowth30mesophilic
37873positivegrowth37mesophilic
59482positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
6119anaerobe
6119microaerophile
31220microaerophile
59482microaerophile

spore formation

  • @ref: 31220
  • spore formation: no

murein

  • @ref: 6119
  • murein short key: A11.20
  • type: A3alpha L-Lys-L-Ser-L-Ala2

observation

  • @ref: 31220
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3122022599arabinose+carbon source
3122028757fructose+carbon source
3122028260galactose+carbon source
3122017234glucose+carbon source
3122024996lactate+carbon source
3122017306maltose+carbon source
3122037684mannose+carbon source
3122028053melibiose+carbon source
31220506227N-acetylglucosamine+carbon source
3122033942ribose+carbon source
3122018222xylose+carbon source
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117306maltose+builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine+builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose+builds acid from
6837116988D-ribose+builds acid from
6837130849L-arabinose+builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
6119----+++----++---------+--+--+---------------------
6119----+++---++++--------+-----++-----------------+--

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
6119wheat sourdoughItalyITAEurope
59482Wheat sourdoughItalyITAEurope
67770Wheat sourdoughItalyITAEurope
122267Food, Wheat sourdough

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Food production
  • Cat3: #Food

taxonmaps

  • @ref: 69479
  • File name: preview.99_6308.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_3002;97_3689;98_4673;99_6308&stattab=map
  • Last taxonomy: Furfurilactobacillus rossiae
  • 16S sequence: LC071853
  • Sequence Identity:
  • Total samples: 4996
  • soil counts: 268
  • aquatic counts: 370
  • animal counts: 4077
  • plant counts: 281

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
61191Risk group (German classification)
1222671Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Lactobacillus rossiae gene for 16S ribosomal RNA, partial sequence, strain: DSM 15814AB3708801498ena231049
6119Lactobacillus sp. CS1 partial 16S rRNA gene, strain CS1AJ5640091368ena231049
67770Lactobacillus rossiae gene for 16S ribosomal RNA, partial sequence, strain: JCM 16176LC0718531521ena231049

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactobacillus rossiae DSM 158141114972.5wgspatric1114972
66792Lactobacillus rossiae DSM 158141114972.6wgspatric1114972
66792Lactobacillus rossiae DSM 158141114972.3wgspatric1114972
66792Furfurilactobacillus rossiae DSM 158142548876843draftimg1114972
66792Furfurilactobacillus rossiae DSM 158142667528057draftimg1114972
66792Lactobacillus rossiae DSM 158142524023155draftimg1114972
67770Furfurilactobacillus rossiae DSM 15814GCA_000277855scaffoldncbi1114972
67770Furfurilactobacillus rossiae DSM 15814GCA_000428925scaffoldncbi1114972
67770Furfurilactobacillus rossiae DSM 15814GCA_001435135contigncbi1114972

GC content

@refGC-contentmethod
611944.6
6777043.3genome sequence analysis
6777044.6high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno94.311yes
flagellatedno97.811no
gram-positiveyes96.94yes
anaerobicno80.349no
aerobicno93.981no
halophileyes77.758no
spore-formingno90.575yes
thermophileno99.81yes
glucose-utilyes92.007yes
glucose-fermentyes85.659no

External links

@ref: 6119

culture collection no.: CCUG 52239, ATCC BAA 822, DSM 15814, CIP 109910, JCM 16176, LMG 22972, VTT E-052790

straininfo link

  • @ref: 76076
  • straininfo: 135116

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15653850Lactobacillus rossii sp. nov., isolated from wheat sourdough.Corsetti A, Settanni L, van Sinderen D, Felis GE, Dellaglio F, Gobbetti MInt J Syst Evol Microbiol10.1099/ijs.0.63075-02005Base Composition, Bread/*microbiology, DNA, Ribosomal/analysis, Genes, rRNA, Genotype, Lactobacillus/*classification/genetics/isolation & purification/metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Polymerase Chain Reaction, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Triticum/*microbiologyGenetics
Phylogeny16957123Lactobacillus siliginis sp. nov., isolated from wheat sourdough in South Korea.Aslam Z, Im WT, Ten LN, Lee MJ, Kim KH, Lee STInt J Syst Evol Microbiol10.1099/ijs.0.64321-02006Base Composition, DNA, Bacterial/*analysis, *Food Microbiology, Korea, Lactobacillus/classification/*isolation & purification, Molecular Sequence Data, RNA, Ribosomal, 16S/*analysis/geneticsBiotechnology
Genetics22965087Draft genome sequence of Lactobacillus rossiae DSM 15814(T).Di Cagno R, De Angelis M, Cattonaro F, Gobbetti MJ Bacteriol10.1128/JB.01248-122012*Genome, Bacterial, Lactobacillus/*classification/*genetics, Molecular Sequence DataPhylogeny
Phylogeny25264826Lactobacillus rossiae, a vitamin B12 producer, represents a metabolically versatile species within the Genus Lactobacillus.De Angelis M, Bottacini F, Fosso B, Kelleher P, Calasso M, Di Cagno R, Ventura M, Picardi E, van Sinderen D, Gobbetti MPLoS One10.1371/journal.pone.01072322014Fermentation, Genes, Bacterial, Lactobacillus/classification/genetics/*metabolism, Phylogeny, Vitamin B 12/*biosynthesisMetabolism
Metabolism27142164Cloning, expression and characterization of a beta-D-xylosidase from Lactobacillus rossiae DSM 15814(T).Pontonio E, Mahony J, Di Cagno R, O'Connell Motherway M, Lugli GA, O'Callaghan A, De Angelis M, Ventura M, Gobbetti M, van Sinderen DMicrob Cell Fact10.1186/s12934-016-0473-z2016Arabinose/metabolism, Cloning, Molecular, *Gene Expression Regulation, Bacterial, Hydrogen-Ion Concentration, Hydrolysis, Lactobacillus/classification/*enzymology/*genetics, Multigene Family, Oligosaccharides/metabolism, Phylogeny, Plasmids/metabolism, Recombinant Proteins/biosynthesis/chemistry/genetics, Temperature, Xylose/metabolism, Xylosidases/chemistry/*genetics/*metabolismEnzymology
Phylogeny28895518Lactobacillus curtus sp. nov., isolated from beer in Finland.Asakawa Y, Takesue N, Asano S, Shimotsu S, Iijima K, Suzuki K, Motoyama Y, Aizawa MInt J Syst Evol Microbiol10.1099/ijsem.0.0022202017Bacterial Typing Techniques, Base Composition, Beer/*microbiology, DNA, Bacterial/genetics, Finland, *Food Microbiology, Genes, Bacterial, Lactobacillus/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNABiotechnology
Phylogeny31407135Lactobacillus jinshani sp. nov., isolated from solid-state vinegar culture of Zhenjiang aromatic vinegar.Yu Y, Li X, Zhang J, Chai LJ, Lu ZM, Xu ZHAntonie Van Leeuwenhoek10.1007/s10482-019-01316-12019*Acetic Acid, Amino Acids, Diamino/metabolism, Bacterial Typing Techniques, Base Composition/genetics, DNA, Bacterial/genetics, Genome, Bacterial/genetics, Lactobacillus/classification/*genetics, Phylogeny, RNA, Ribosomal, 16S/geneticsGenetics
Phylogeny35604827Furfurilactobacillus milii sp. nov., isolated from fermented cereal foods.Simpson DJ, Zhang JS, D'Amico V, Llamas-Arriba MG, Ganzle MGInt J Syst Evol Microbiol10.1099/ijsem.0.0053862022Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Edible Grain, Fatty Acids/chemistry, *Genes, Bacterial, Lactobacillaceae, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
6119Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15814)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15814
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
31220Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604127546
37873Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7707
59482Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 52239)https://www.ccug.se/strain?id=52239
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76076Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID135116.1StrainInfo: A central database for resolving microbial strain identifiers
122267Curators of the CIPCollection of Institut Pasteur (CIP 109910)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109910