Strain identifier

BacDive ID: 6598

Type strain: Yes

Species: Dellaglioa algida

Strain Designation: M6A9

Strain history: CIP <- 2000, JCM <- Y. Kato: strain M6A9 <- H. Hayashidani

NCBI tax ID(s): 1423719 (strain), 105612 (species)

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General

@ref: 6010

BacDive-ID: 6598

DSM-Number: 15638

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, psychrophilic, Gram-positive, rod-shaped

description: Dellaglioa algida M6A9 is an anaerobe, psychrophilic, Gram-positive bacterium that was isolated from vacuum-packaged beef.

NCBI tax id

NCBI tax idMatching level
1423719strain
105612species

strain history

@refhistory
6010<- JCM <- Y. Kato; M6A9 <- H. Hayashidani
67770Y. Kato M6A9 <-- H. Hayashidani.
116227CIP <- 2000, JCM <- Y. Kato: strain M6A9 <- H. Hayashidani

doi: 10.13145/bacdive6598.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Dellaglioa
  • species: Dellaglioa algida
  • full scientific name: Dellaglioa algida (Kato et al. 2000) Zheng et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus algidus

@ref: 6010

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Dellaglioa

species: Dellaglioa algida

full scientific name: Dellaglioa algida (Kato et al. 2000) Zheng et al. 2020

strain designation: M6A9

type strain: yes

Morphology

cell morphology

  • @ref: 116227
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6010MRS MEDIUM (DSMZ Medium 11)yeshttps://mediadive.dsmz.de/medium/11Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
35981MEDIUM 40- for Lactobacillus and LeuconostocyesDistilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
116227CIP Medium 40yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40

culture temp

@refgrowthtypetemperaturerange
6010positivegrowth20psychrophilic
35981positivegrowth20psychrophilic
67770positivegrowth20psychrophilic
116227positivegrowth10-22psychrophilic
116227nogrowth30mesophilic
116227nogrowth37mesophilic
116227nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
6010anaerobe
6010microaerophile
116227facultative anaerobe

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371esculin-builds acid from4853
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
116227nitrate-reduction17632
116227nitrite-reduction16301
116227nitrate+respiration17632

antibiotic resistance

  • @ref: 116227
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite tests

  • @ref: 116227
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)-
68382alkaline phosphatase-3.1.3.1
116227oxidase-
116227alcohol dehydrogenase-1.1.1.1
116227catalase-1.11.1.6
116227lysine decarboxylase-4.1.1.18
116227ornithine decarboxylase-4.1.1.17

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116227-----++---++-+------

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
6010----++-----+++--------+-+/--+/----------------------+/--

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
6010vacuum-packaged beefJapanJPNAsia
67770Vacuum-packaged beef

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Bottled, canned, packed food
#Engineered#Food production#Meat

taxonmaps

  • @ref: 69479
  • File name: preview.99_3406.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_1781;97_2131;98_2611;99_3406&stattab=map
  • Last taxonomy: Dellaglioa algida subclade
  • 16S sequence: LC096231
  • Sequence Identity:
  • Total samples: 11958
  • soil counts: 492
  • aquatic counts: 614
  • animal counts: 10533
  • plant counts: 319

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
60101Risk group (German classification)
1162271Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Lactobacillus algidus gene for 16S rRNA, partial sequence, strain: JCM 10491AB289022685ena105612
6010Lactobacillus algidus gene for 16S rRNAAB0332091505ena105612
67770Lactobacillus algidus gene for 16S ribosomal RNA, partial sequence, strain: JCM 10491LC0962311501ena105612

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactobacillus algidus DSM 156381423719.4wgspatric1423719
66792Dellaglioa algidus DSM 156382663763513draftimg1423719
67770Dellaglioa algida DSM 15638GCA_001434695contigncbi1423719

GC content

@refGC-contentmethod
601036.5
6777036genome sequence analysis
6777036.5high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno96.391no
gram-positiveyes95.239no
anaerobicno94.272no
halophileyes90.762no
spore-formingno96.135no
glucose-utilyes92.688no
thermophileno99.519yes
aerobicno97.244yes
flagellatedno98.75no
glucose-fermentyes87.642no

External links

@ref: 6010

culture collection no.: DSM 15638, JCM 10491, NCIMB 13914, ATCC BAA 482, CCM 7143, CCUG 44587, CCUG 45366, CGMCC 1.3701, CIP 106688, LMG 19872

straininfo link

@refstraininfo
7607214608
76073312362

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny10843056Lactobacillus algidus sp. nov., a psychrophilic lactic acid bacterium isolated from vacuum-packaged refrigerated beef.Kato Y, Sakala RM, Hayashidani H, Kiuchi A, Kaneuchi C, Ogawa MInt J Syst Evol Microbiol10.1099/00207713-50-3-11432000Animals, Bacterial Proteins/analysis, Base Composition, Cattle, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, *Food Packaging, Genes, rRNA/genetics, Lactobacillus/chemistry/*classification/genetics/growth & development/isolation & purification, Meat/*microbiology, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, *Refrigeration, VacuumGenetics
Phylogeny16166732Lactobacillus concavus sp. nov., isolated from the walls of a distilled spirit fermenting cellar in China.Tong H, Dong XInt J Syst Evol Microbiol10.1099/ijs.0.63509-02005Base Composition, China, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fermentation, Genes, rRNA, Genotype, Geologic Sediments/*microbiology, Lactic Acid/*metabolism, Lactobacillus/classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Wine/*microbiologyGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6010Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15638)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15638
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
35981Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18846
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76072Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID14608.1StrainInfo: A central database for resolving microbial strain identifiers
76073Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID312362.1StrainInfo: A central database for resolving microbial strain identifiers
116227Curators of the CIPCollection of Institut Pasteur (CIP 106688)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106688