Strain identifier
BacDive ID: 6598
Type strain:
Species: Dellaglioa algida
Strain Designation: M6A9
Strain history: CIP <- 2000, JCM <- Y. Kato: strain M6A9 <- H. Hayashidani
NCBI tax ID(s): 1423719 (strain), 105612 (species)
General
@ref: 6010
BacDive-ID: 6598
DSM-Number: 15638
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, psychrophilic, Gram-positive, rod-shaped
description: Dellaglioa algida M6A9 is an anaerobe, psychrophilic, Gram-positive bacterium that was isolated from vacuum-packaged beef.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1423719 | strain |
105612 | species |
strain history
@ref | history |
---|---|
6010 | <- JCM <- Y. Kato; M6A9 <- H. Hayashidani |
67770 | Y. Kato M6A9 <-- H. Hayashidani. |
116227 | CIP <- 2000, JCM <- Y. Kato: strain M6A9 <- H. Hayashidani |
doi: 10.13145/bacdive6598.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Dellaglioa
- species: Dellaglioa algida
- full scientific name: Dellaglioa algida (Kato et al. 2000) Zheng et al. 2020
synonyms
- @ref: 20215
- synonym: Lactobacillus algidus
@ref: 6010
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Dellaglioa
species: Dellaglioa algida
full scientific name: Dellaglioa algida (Kato et al. 2000) Zheng et al. 2020
strain designation: M6A9
type strain: yes
Morphology
cell morphology
- @ref: 116227
- gram stain: positive
- cell shape: rod-shaped
- motility: no
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
6010 | MRS MEDIUM (DSMZ Medium 11) | yes | https://mediadive.dsmz.de/medium/11 | Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water |
35981 | MEDIUM 40- for Lactobacillus and Leuconostoc | yes | Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g) | |
116227 | CIP Medium 40 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
6010 | positive | growth | 20 | psychrophilic |
35981 | positive | growth | 20 | psychrophilic |
67770 | positive | growth | 20 | psychrophilic |
116227 | positive | growth | 10-22 | psychrophilic |
116227 | no | growth | 30 | mesophilic |
116227 | no | growth | 37 | mesophilic |
116227 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
6010 | anaerobe |
6010 | microaerophile |
116227 | facultative anaerobe |
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | gluconate | - | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | gentiobiose | - | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | - | builds acid from | 27082 |
68371 | sucrose | - | builds acid from | 17992 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | lactose | - | builds acid from | 17716 |
68371 | maltose | - | builds acid from | 17306 |
68371 | cellobiose | - | builds acid from | 17057 |
68371 | esculin | - | builds acid from | 4853 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | + | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | D-mannitol | - | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | + | builds acid from | 16024 |
68371 | D-fructose | + | builds acid from | 15824 |
68371 | D-glucose | + | builds acid from | 17634 |
68371 | D-galactose | - | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | - | builds acid from | 65327 |
68371 | D-ribose | + | builds acid from | 16988 |
68371 | L-arabinose | + | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | - | builds acid from | 17754 |
116227 | nitrate | - | reduction | 17632 |
116227 | nitrite | - | reduction | 16301 |
116227 | nitrate | + | respiration | 17632 |
antibiotic resistance
- @ref: 116227
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite tests
- @ref: 116227
- Chebi-ID: 15688
- metabolite: acetoin
- voges-proskauer-test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | + | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | - | |
68382 | esterase (C 4) | - | |
68382 | alkaline phosphatase | - | 3.1.3.1 |
116227 | oxidase | - | |
116227 | alcohol dehydrogenase | - | 1.1.1.1 |
116227 | catalase | - | 1.11.1.6 |
116227 | lysine decarboxylase | - | 4.1.1.18 |
116227 | ornithine decarboxylase | - | 4.1.1.17 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116227 | - | - | - | - | - | + | + | - | - | - | + | + | - | + | - | - | - | - | - | - |
API 50CHac
@ref | Q | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
6010 | - | - | - | - | + | + | - | - | - | - | - | + | + | + | - | - | - | - | - | - | - | - | + | - | +/- | - | +/- | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | +/- | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent |
---|---|---|---|---|
6010 | vacuum-packaged beef | Japan | JPN | Asia |
67770 | Vacuum-packaged beef |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Food production | #Bottled, canned, packed food |
#Engineered | #Food production | #Meat |
taxonmaps
- @ref: 69479
- File name: preview.99_3406.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_1781;97_2131;98_2611;99_3406&stattab=map
- Last taxonomy: Dellaglioa algida subclade
- 16S sequence: LC096231
- Sequence Identity:
- Total samples: 11958
- soil counts: 492
- aquatic counts: 614
- animal counts: 10533
- plant counts: 319
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
6010 | 1 | Risk group (German classification) |
116227 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Lactobacillus algidus gene for 16S rRNA, partial sequence, strain: JCM 10491 | AB289022 | 685 | ena | 105612 |
6010 | Lactobacillus algidus gene for 16S rRNA | AB033209 | 1505 | ena | 105612 |
67770 | Lactobacillus algidus gene for 16S ribosomal RNA, partial sequence, strain: JCM 10491 | LC096231 | 1501 | ena | 105612 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Lactobacillus algidus DSM 15638 | 1423719.4 | wgs | patric | 1423719 |
66792 | Dellaglioa algidus DSM 15638 | 2663763513 | draft | img | 1423719 |
67770 | Dellaglioa algida DSM 15638 | GCA_001434695 | contig | ncbi | 1423719 |
GC content
@ref | GC-content | method |
---|---|---|
6010 | 36.5 | |
67770 | 36 | genome sequence analysis |
67770 | 36.5 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 96.391 | no |
gram-positive | yes | 95.239 | no |
anaerobic | no | 94.272 | no |
halophile | yes | 90.762 | no |
spore-forming | no | 96.135 | no |
glucose-util | yes | 92.688 | no |
thermophile | no | 99.519 | yes |
aerobic | no | 97.244 | yes |
flagellated | no | 98.75 | no |
glucose-ferment | yes | 87.642 | no |
External links
@ref: 6010
culture collection no.: DSM 15638, JCM 10491, NCIMB 13914, ATCC BAA 482, CCM 7143, CCUG 44587, CCUG 45366, CGMCC 1.3701, CIP 106688, LMG 19872
straininfo link
@ref | straininfo |
---|---|
76072 | 14608 |
76073 | 312362 |
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 10843056 | Lactobacillus algidus sp. nov., a psychrophilic lactic acid bacterium isolated from vacuum-packaged refrigerated beef. | Kato Y, Sakala RM, Hayashidani H, Kiuchi A, Kaneuchi C, Ogawa M | Int J Syst Evol Microbiol | 10.1099/00207713-50-3-1143 | 2000 | Animals, Bacterial Proteins/analysis, Base Composition, Cattle, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, *Food Packaging, Genes, rRNA/genetics, Lactobacillus/chemistry/*classification/genetics/growth & development/isolation & purification, Meat/*microbiology, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, *Refrigeration, Vacuum | Genetics |
Phylogeny | 16166732 | Lactobacillus concavus sp. nov., isolated from the walls of a distilled spirit fermenting cellar in China. | Tong H, Dong X | Int J Syst Evol Microbiol | 10.1099/ijs.0.63509-0 | 2005 | Base Composition, China, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fermentation, Genes, rRNA, Genotype, Geologic Sediments/*microbiology, Lactic Acid/*metabolism, Lactobacillus/classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Wine/*microbiology | Genetics |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
6010 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15638) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15638 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
35981 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/18846 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68371 | Automatically annotated from API 50CH acid | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
76072 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID14608.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
76073 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID312362.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
116227 | Curators of the CIP | Collection of Institut Pasteur (CIP 106688) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106688 |