Strain identifier

BacDive ID: 6593

Type strain: Yes

Species: Companilactobacillus versmoldensis

Strain Designation: KU-3, BAFF Lb1201, KU-3T

Strain history: CIP <- 2003, L. Kröckel, BAFF, Kulmbach, Germany: strain KU-3T

NCBI tax ID(s): 194326 (species)

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General

@ref: 5581

BacDive-ID: 6593

DSM-Number: 14857

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, rod-shaped

description: Companilactobacillus versmoldensis KU-3 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from poultry salami.

NCBI tax id

  • NCBI tax id: 194326
  • Matching level: species

strain history

@refhistory
5581<- L. Kröckel <- A. Bantleon, KU-3
67770DSM 14857 <-- L. Kröckel <-- A. Bantleon KU-3.
123825CIP <- 2003, L. Kröckel, BAFF, Kulmbach, Germany: strain KU-3T

doi: 10.13145/bacdive6593.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Companilactobacillus
  • species: Companilactobacillus versmoldensis
  • full scientific name: Companilactobacillus versmoldensis (Kröckel et al. 2003) Zheng et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus versmoldensis

@ref: 5581

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Companilactobacillus

species: Companilactobacillus versmoldensis

full scientific name: Companilactobacillus versmoldensis (Kröckel et al. 2003) Zheng et al. 2020

strain designation: KU-3, BAFF Lb1201, KU-3T

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
123825positiverod-shapedno
125438no92.5
125438positive93.599

colony morphology

  • @ref: 60268
  • incubation period: 2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5581MRS MEDIUM (DSMZ Medium 11)yeshttps://mediadive.dsmz.de/medium/11Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
38240MEDIUM 40- for Lactobacillus and LeuconostocyesDistilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
123825CIP Medium 40yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40

culture temp

@refgrowthtypetemperature
5581positivegrowth30
38240positivegrowth30
60268positivegrowth30
67770positivegrowth30
123825positivegrowth15-37
123825nogrowth10
123825nogrowth45

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
60268aerobe
125439obligate aerobe97

spore formation

  • @ref: 125439
  • spore formation: no
  • confidence: 90.8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12382517632nitrate+reduction
12382516301nitrite-reduction
68371Potassium 5-ketogluconate-builds acid from
6837127613amygdalin-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837117754glycerol-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837117716lactose-builds acid from
6837117306maltose+builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837159640N-acetylglucosamine+builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose+builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from

metabolite tests

  • @ref: 123825
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-glucosidase+3.2.1.20
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-galactosidase+3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382cystine arylamidase-3.4.11.3
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
123825oxidase-
123825alcohol dehydrogenase-1.1.1.1
123825catalase-1.11.1.6
123825lysine decarboxylase-4.1.1.18
123825ornithine decarboxylase-4.1.1.17
68382trypsin-3.4.21.4

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123825--++-++---++++-++---

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
5581-----+----++++--------+-----+---------------------
123825----+----++++--------+-----+-+-------------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic locationisolation date
5581poultry salamiGermanyDEUEurope
60268Poultry salamiGermanyDEUEurope
67770Raw fermented sausageGermanyDEUEuropeVersmold
123825Poultry, raw fermented sausageGermanyDEUEuropeVersmold1999

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Meat
#Host#Birds

taxonmaps

  • @ref: 69479
  • File name: preview.99_8149.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_1756;97_2100;98_3278;99_8149&stattab=map
  • Last taxonomy: Companilactobacillus
  • 16S sequence: LC519854
  • Sequence Identity:
  • Total samples: 308
  • soil counts: 9
  • aquatic counts: 29
  • animal counts: 260
  • plant counts: 10

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
55811Risk group (German classification)
1238251Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Lactobacillus versmoldensis partial 16S rRNA gene,type strain KU-3TAJ4967911610nuccore194326
20218Lactobacillus versmoldensis 16S ribosomal RNA gene, partial sequenceAF502292562nuccore194326
67770Lactobacillus versmoldensis JCM 16174 gene for 16S rRNA, partial sequenceLC5198541513nuccore194326
124043Lactobacillus versmoldensis gene for 16S rRNA, partial sequence, strain: NBRC 106069.AB6260561499nuccore194326

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactobacillus versmoldensis DSM 14857 = KCTC 38141423815.3wgspatric1423815
66792Lactobacillus versmoldensis KCTC 38141046598.4wgspatric1423815
66792Lactobacillus versmoldensis DSM 148572700989145draftimg1423815
66792Lactobacillus versmoldensis KCTC 38142513237303draftimg1423815
67770Companilactobacillus versmoldensis DSM 14857 = KCTC 3814GCA_001434295contigncbi1423815
67770Companilactobacillus versmoldensis DSM 14857 = KCTC 3814GCA_000260455contigncbi1423815

GC content

@refGC-contentmethod
6777038.3genome sequence analysis
6777040.5thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe97
125439BacteriaNetgram_stainReaction to gram-stainingpositive84.8
125439BacteriaNetmotilityAbility to perform movementno74.4
125439BacteriaNetspore_formationAbility to form endo- or exosporesno90.8
125438gram-positivegram-positivePositive reaction to Gram-stainingyes93.599no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no85.803no
125438spore-formingspore-formingAbility to form endo- or exosporesno79.725no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no70.215yes
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno95.958yes
125438motile2+flagellatedAbility to perform flagellated movementno92.5no

External links

@ref: 5581

culture collection no.: CCUG 54626, DSM 14857, ATCC BAA-478, NCCB 100034, JCM 16174, CECT 5773, CIP 107931, KCTC 3814, LMG 21929, NBRC 106069

straininfo link

  • @ref: 76067
  • straininfo: 100716

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny12710620Lactobacillus versmoldensis sp. nov., isolated from raw fermented sausage.Krockel L, Schillinger U, Franz CMAP, Bantleon A, Ludwig WInt J Syst Evol Microbiol10.1099/ijs.0.02387-02003Fermentation, *Food Microbiology, Lactobacillus/chemistry/*classification/genetics/physiology, Meat/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/*analysis/genetics, Sequence Analysis, DNABiotechnology
Phylogeny19126729Lactobacillus nodensis sp. nov., isolated from rice bran.Kashiwagi T, Suzuki T, Kamakura TInt J Syst Evol Microbiol10.1099/ijs.0.65772-02009Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/genetics, Fermentation, Genes, rRNA, Japan, Lactobacillus/*classification/genetics/*isolation & purification/physiology, Nucleic Acid Hybridization, Oryza/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species SpecificityTranscriptome
Genetics21914893Genome sequence of Lactobacillus versmoldensis KCTC 3814.Kim DS, Choi SH, Kim DW, Kim RN, Nam SH, Kang A, Kim A, Park HSJ Bacteriol10.1128/JB.05708-112011Genome, Bacterial/*genetics, Lactobacillus/*genetics, Molecular Sequence Data
Phylogeny23271644Lactobacillus ginsenosidimutans sp. nov., isolated from kimchi with the ability to transform ginsenosides.Jung HM, Liu QM, Kim JK, Lee ST, Kim SC, Im WTAntonie Van Leeuwenhoek10.1007/s10482-012-9868-y2012Bacterial Typing Techniques, Biotransformation, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Food Microbiology, Ginsenosides/*metabolism, Lactobacillus/*classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, beta-Glucosidase/metabolismMetabolism
Phylogeny24876240Lactobacillus furfuricola sp. nov., isolated from Nukadoko, rice bran paste for Japanese pickles.Irisawa T, Tanaka N, Kitahara M, Sakamoto M, Ohkuma M, Okada SInt J Syst Evol Microbiol10.1099/ijs.0.063933-02014Bacterial Typing Techniques, DNA, Bacterial/genetics, Fermentation, *Food Microbiology, Genes, Bacterial, Japan, Lactic Acid/metabolism, Lactobacillus/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Oryza/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNABiotechnology
Phylogeny26486967Lactobacillus insicii sp. nov., isolated from fermented raw meat.Ehrmann MA, Krockel L, Lick S, Radmann P, Bantleon A, Vogel RFInt J Syst Evol Microbiol10.1099/ijsem.0.0007052015Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Dipeptides/chemistry, Fatty Acids/chemistry, Fermentation, *Food Microbiology, Lactobacillus/*cytology/genetics/isolation & purification, Meat Products/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, SwineBiotechnology
Phylogeny31668878Polyphasic characterization of two novel Lactobacillus spp. isolated from blown salami packages: Description of Lactobacillus halodurans sp. nov. and Lactobacillus salsicarnum sp. nov.Schuster JA, Klingl A, Vogel RF, Ehrmann MASyst Appl Microbiol10.1016/j.syapm.2019.1260232019Animals, Base Composition, Fatty Acids/analysis, Fermented Foods/*microbiology, *Food Microbiology, Genes, Bacterial/genetics, Genome, Bacterial/genetics, Lactobacillus/chemistry/*classification/genetics/ultrastructure, Meat Products/*microbiology, Nucleic Acid Hybridization, Peptidoglycan/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, SwineBiotechnology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5581Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14857)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14857
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38240Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5497
60268Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 54626)https://www.ccug.se/strain?id=54626
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76067Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID100716.1StrainInfo: A central database for resolving microbial strain identifiers
123825Curators of the CIPCollection of Institut Pasteur (CIP 107931)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107931
124043Isabel Schober, Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1