Strain identifier

BacDive ID: 6569

Type strain: Yes

Species: Lactiplantibacillus paraplantarum

Strain history: CIP <- 1995, F. Bringel, Strasbourg Univ., Strasbourg, France <- TEPRAL Lab. Kronenbourg Brewery, France: strain CST 10961, Lactobacillus plantarum.

NCBI tax ID(s): 1423789 (strain), 60520 (species)

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General

@ref: 4029

BacDive-ID: 6569

DSM-Number: 10667

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Lactiplantibacillus paraplantarum DSM 10667 is an anaerobe, mesophilic bacterium that was isolated from beer contaminant.

NCBI tax id

NCBI tax idMatching level
1423789strain
60520species

strain history

@refhistory
4029<- CNRZ <- Brasseries Kronenbourg, CST 10961
67770LMG 16673 <-- F. Bringel CNRS 1885 <-- Brasseries Kronenbourg CST 10961.
121586CIP <- 1995, F. Bringel, Strasbourg Univ., Strasbourg, France <- TEPRAL Lab. Kronenbourg Brewery, France: strain CST 10961, Lactobacillus plantarum.

doi: 10.13145/bacdive6569.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Lactiplantibacillus
  • species: Lactiplantibacillus paraplantarum
  • full scientific name: Lactiplantibacillus paraplantarum (Curk et al. 1996) Zheng et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus paraplantarum

@ref: 4029

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lactiplantibacillus

species: Lactiplantibacillus paraplantarum

full scientific name: Lactiplantibacillus paraplantarum (Curk et al. 1996) Zheng et al. 2020

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no97.431
69480100positive
121586nopositiverod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4029MRS MEDIUM (DSMZ Medium 11)yeshttps://mediadive.dsmz.de/medium/11Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
38513MEDIUM 40- for Lactobacillus and LeuconostocyesDistilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
121586CIP Medium 40yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40

culture temp

@refgrowthtypetemperaturerange
4029positivegrowth30mesophilic
38513positivegrowth37mesophilic
53142positivegrowth37mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
53142anaerobe
53142microaerophile
121586facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.998

murein

  • @ref: 4029
  • murein short key: A31
  • type: A1gamma m-Dpm-direct

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371melezitose+builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose+builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin+builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
121586nitrate-reduction17632
121586nitrite-reduction16301

metabolite production

  • @ref: 121586
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)-
68382alkaline phosphatase+3.1.3.1
121586oxidase-
121586catalase-1.11.1.6
121586urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121586-+-+-+----++-+-+++--

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
4029----------++++----+---+++++++++++-++---+-------+--
4029----------++++----+---+++++++++++-++---+-------+--
121586--------+++++----+---+++++++++++-++/----+-------+/---

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
121586---------------------------------------------------------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
4029beer contaminantFranceFRAEurope
67770Beer contaminant
121586As a beer-spoilage agentFranceFRAEuropeAlsace

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Fermented
#Engineered#Laboratory#Contaminant
#Engineered#Food production#Beverage

taxonmaps

  • @ref: 69479
  • File name: preview.99_195.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_140;97_151;98_168;99_195&stattab=map
  • Last taxonomy: Lactobacillaceae
  • 16S sequence: LC383832
  • Sequence Identity:
  • Total samples: 38637
  • soil counts: 2696
  • aquatic counts: 4479
  • animal counts: 29069
  • plant counts: 2393

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
40291Risk group (German classification)
1215861Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Lactobacillus paraplantarum 16S/23S ribosomal RNA small intergenic spacer region, complete sequenceU97132205ena60520
20218Lactobacillus paraplantarum 16S/23S ribosomal RNA large intergenic spacer region, tRNA-Ile and tRNA-Ala genes, complete sequenceU97138435ena60520
20218Lactobacillus paraplantarum 16S rRNA gene, strain DSM 10667TAJ3062971502ena60520
20218Lactobacillus paraplantarum gene for 16S rRNA, partial sequence, strain: JCM 12533AB289239626ena60520
67770Lactobacillus paraplantarum JCM 12533 gene for 16S ribosomal RNA, partial sequenceLC3838321506ena60520

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactiplantibacillus paraplantarum DSM 10667GCA_003641145completencbi60520
66792Lactobacillus paraplantarum DSM 106671423789.3wgspatric1423789
66792Lactobacillus paraplantarum strain DSM 1066760520.20completepatric60520
66792Lactobacillus paraplantarum strain NBRC 10715160520.22wgspatric60520
66792Lactiplantibacillus paraplantarum DSM 106672896850075completeimg1423789
66792Lactiplantibacillus paraplantarum DSM 106672663762986draftimg1423789
67770Lactiplantibacillus paraplantarum DSM 10667GCA_001435655scaffoldncbi1423789
67770Lactiplantibacillus paraplantarum NBRC 107151GCA_007991915contigncbi60520

GC content

@refGC-contentmethod
402944
6777044thermal denaturation, midpoint method (Tm)
6777043.7genome sequence analysis

Genome-based predictions

predictions

  • trait: spore-forming
  • prediction: no
  • confidence: 100
  • training_data: no

External links

@ref: 4029

culture collection no.: DSM 10667, CIP 104668, CNRZ 1885, CCUG 35983, CST 10961, JCM 12533, ATCC 700211, BCRC 17178, CCM 4613, LMG 16673, NBRC 107151, NCIMB 13579, NRRL B-23115, VTT E-093128

straininfo link

  • @ref: 76043
  • straininfo: 9758

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15551474Lactobacillus paraplantarum sp. now., a new species related to Lactobacillus plantarum.Curk MC, Hubert JC, Bringel FInt J Syst Bacteriol10.1099/00207713-46-2-5951996Base Composition, Beer/microbiology, DNA, Bacterial/analysis, Feces/microbiology, Humans, Lactobacillus/*classification/genetics/isolation & purification/physiology, Methylmannosides/metabolism, Nucleic Acid HybridizationPathogenicity
Phylogeny23950151Lactobacillus mudanjiangensis sp. nov., Lactobacillus songhuajiangensis sp. nov. and Lactobacillus nenjiangensis sp. nov., isolated from Chinese traditional pickle and sourdough.Gu CT, Li CY, Yang LJ, Huo GCInt J Syst Evol Microbiol10.1099/ijs.0.054296-02013Bacterial Typing Techniques, Base Composition, Bread/microbiology, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermentation, *Food Microbiology, Genes, Bacterial, Lactobacillus/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vegetables/microbiologyBiotechnology
Phylogeny32228805Lactobacillus garii sp. nov., isolated from a fermented cassava product.Diaz M, Sayavedra L, Atter A, Mayer MJ, Saha S, Amoa-Awua W, Narbad AInt J Syst Evol Microbiol10.1099/ijsem.0.0041212020Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermented Foods/*microbiology, *Food Microbiology, Genes, Bacterial, Ghana, Lactobacillus/*classification/isolation & purification, Manihot/*microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNABiotechnology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4029Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10667)https://www.dsmz.de/collection/catalogue/details/culture/DSM-10667
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38513Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16602
53142Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 35983)https://www.ccug.se/strain?id=35983
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
76043Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID9758.1StrainInfo: A central database for resolving microbial strain identifiers
121586Curators of the CIPCollection of Institut Pasteur (CIP 104668)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104668