Strain identifier

BacDive ID: 6564

Type strain: Yes

Species: Lactobacillus zeae

Culture col. no.: DSM 20178, ATCC 15820, RIA 482, CCUG 35515, KCTC 3804

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General

@ref: 8608

BacDive-ID: 6564

DSM-Number: 20178

keywords: Bacteria, 16S sequence, genome sequence, mesophilic

description: Lactobacillus zeae DSM 20178 is a mesophilic bacterium that was isolated from corn steep liquor.

strain history: <- ATCC <- RIA (Lactobacterium zeae)

doi: 10.13145/bacdive6564.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/firmicutes
  • domain: Bacteria
  • phylum: Firmicutes
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Lacticaseibacillus
  • species: Lacticaseibacillus zeae
  • full scientific name: Lacticaseibacillus zeae (Dicks et al. 1996) Liu and Gu 2020
  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus zeae

@ref: 8608

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lactobacillus

species: Lactobacillus zeae

full scientific name: Lactobacillus zeae (ex Kuznetsov 1959) Dicks et al. 1996

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8608MRS MEDIUM (DSMZ Medium 11)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium11.pdf
40580MEDIUM 40- for Lactobacillus and LeuconostocyesDistilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)

culture temp

@refgrowthtypetemperaturerange
8608positivegrowth37mesophilic
40580positivegrowth37mesophilic

Physiology and metabolism

murein

  • @ref: 8608
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
8608-----+----++++-+--+---++++++---++-+-------+-+-----
8608---+-+----++++-+-+/-+---++++++++-++-+----+--+-++-++-

Isolation, sampling and environmental information

isolation

@refsample type
8608corn steep liquor
52785Corn steep liquor

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Fermented
#Host#Plants#Herbaceous plants (Grass,Crops)
#Engineered#Food production#Beverage

Safety information

risk assessment

  • @ref: 8608
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Lactobacillus zeae gene for 16S rRNA, partial sequence, strain: YIT 0278 (= ATCC 15820)AB0082131559ena57037
20218Lactobacillus zeae ATCC 15820 16S ribosomal RNA gene, partial sequenceAF429522507ena57037
20218Lactobacillus zeae strain ATCC 15820 16S ribosomal RNA gene, partial sequence; 16S-23S intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceAF429609538ena57037
20218Lactobacillus zeae strain ATCC 15820 16S ribosomal RNA gene, partial sequenceAY196979518ena57037
20218Lactobacillus zeae gene for 16S ribosomal RNA, partial sequenceD865161522ena57037
20218Lactobacillus zeae genes for 16S rRNA, 16S-23S internal transcribed spacer, tRNA-Ile, tRNA-Ala, 23S rRNA, partial and complete sequence, strain:JCM 11302AB237514577ena57037
20218Lactobacillus zeae genes for 16S rRNA, 16S-23S internal transcribed spacer, 23S rRNA, partial sequence, strain:JCM 11302AB237515364ena57037
20218Lactobacillus zeae gene for 16S rRNA, partial sequence, strain: JCM 11302AB289313643ena57037

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactobacillus zeae DSM 20178 = KCTC 3804GCA_001433745scaffoldncbi1423816
66792Lactobacillus zeae DSM 20178 = KCTC 3804GCA_000260435contigncbi1423816
66792Lactobacillus zeae CRBIP24.58GCA_005796005contigncbi57037
66792Lactobacillus zeae CRBIP24.44GCA_005796045contigncbi57037
66792Lactobacillus zeae DSM 20178 = KCTC 38041423816.3wgspatric1423816
66792Lactobacillus zeae KCTC 38041046597.4wgspatric1423816
66792Lactobacillus zeae strain CRBIP24.4457037.7wgspatric57037
66792Lactobacillus zeae strain CRBIP24.5857037.6wgspatric57037
66792Lactobacillus zeae strain DS13_1357037.5wgspatric57037
66792Lactobacillus zeae strain DS1_1357037.4wgspatric57037

GC content

  • @ref: 8608
  • GC-content: 48.0

External links

@ref: 8608

culture collection no.: DSM 20178, ATCC 15820, RIA 482, CCUG 35515, KCTC 3804

straininfo link

@refpassport
20218http://www.straininfo.net/strains/35846
20218http://www.straininfo.net/strains/35845
20218http://www.straininfo.net/strains/709810

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8608Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20178)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20178
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40580Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15030
52785Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 35515)https://www.ccug.se/strain?id=35515
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)