Strain identifier
BacDive ID: 6554
Type strain:
Species: Lacticaseibacillus paracasei subsp. paracasei
Strain Designation: 41
Strain history: T. Mitsuoka S8-11 <-- DSM 20207 <-- I. G. Abo-Elnaga 41.
NCBI tax ID(s): 47714 (subspecies)
General
@ref: 8477
BacDive-ID: 6554
DSM-Number: 20207
keywords: genome sequence, Bacteria, mesophilic, human pathogen
description: Lacticaseibacillus paracasei subsp. paracasei 41 is a mesophilic human pathogen that was isolated from milk.
NCBI tax id
- NCBI tax id: 47714
- Matching level: subspecies
strain history
@ref | history |
---|---|
8477 | <- I. G. Abo-Elnaga, 41 (Lactobacillus casei subsp. pseudoplantarum) |
67770 | T. Mitsuoka S8-11 <-- DSM 20207 <-- I. G. Abo-Elnaga 41. |
doi: 10.13145/bacdive6554.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Lacticaseibacillus
- species: Lacticaseibacillus paracasei subsp. paracasei
- full scientific name: Lacticaseibacillus paracasei subsp. paracasei (Collins et al. 1989) Zheng et al. 2020
synonyms
- @ref: 20215
- synonym: Lactobacillus paracasei subsp. paracasei
@ref: 8477
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Lacticaseibacillus
species: Lacticaseibacillus paracasei subsp. paracasei
full scientific name: Lacticaseibacillus paracasei subsp. paracasei (Collins et al. 1989) Zheng et al. 2020
strain designation: 41
type strain: no
Culture and growth conditions
culture medium
- @ref: 8477
- name: MRS MEDIUM (DSMZ Medium 11)
- growth: yes
- link: https://mediadive.dsmz.de/medium/11
- composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
8477 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
compound production
- @ref: 8477
- compound: lactic acid racemase
murein
- @ref: 8477
- murein short key: A11.31
- type: A4alpha L-Lys-D-Asp
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
8477 | milk |
67770 | Milk |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host Body Product | #Fluids | #Milk |
#Engineered | #Food production | #Dairy product |
Safety information
risk assessment
- @ref: 8477
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Lactobacillus paracasei strain DSM 20207 | 1597.16 | wgs | patric | 1597 |
66792 | Lacticaseibacillus paracasei DSM 20207 | 2645727808 | draft | img | 1597 |
67770 | Lacticaseibacillus paracasei DSM 20207 | GCA_000949485 | contig | ncbi | 1597 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 93.81 | no |
gram-positive | yes | 94.61 | no |
anaerobic | no | 94.895 | no |
aerobic | no | 95.866 | no |
halophile | yes | 79.15 | no |
spore-forming | no | 91.036 | no |
thermophile | no | 97.674 | yes |
glucose-util | yes | 92.362 | no |
flagellated | no | 97.334 | no |
glucose-ferment | yes | 90.284 | no |
External links
@ref: 8477
culture collection no.: DSM 20207, NCDO 1977, JCM 1161
straininfo link
- @ref: 76025
- straininfo: 49591
literature
- topic: Metabolism
- Pubmed-ID: 15795782
- title: Biocatalytic racemisation of alpha-hydroxycarboxylic acids at physiological conditions.
- authors: Glueck SM, Larissegger-Schnell B, Csar K, Kroutil W, Faber K
- journal: Chem Commun (Camb)
- DOI: 10.1039/b418786e
- year: 2005
- mesh: Carboxylic Acids/*chemistry, Catalysis, Isomerism, Lactobacillus/chemistry/metabolism, Molecular Structure, Oxidation-Reduction
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
8477 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20207) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-20207 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
76025 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49591.1 | StrainInfo: A central database for resolving microbial strain identifiers |