Strain identifier

BacDive ID: 6554

Type strain: No

Species: Lacticaseibacillus paracasei subsp. paracasei

Strain Designation: 41

Strain history: T. Mitsuoka S8-11 <-- DSM 20207 <-- I. G. Abo-Elnaga 41.

NCBI tax ID(s): 47714 (subspecies)

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General

@ref: 8477

BacDive-ID: 6554

DSM-Number: 20207

keywords: genome sequence, Bacteria, mesophilic, human pathogen

description: Lacticaseibacillus paracasei subsp. paracasei 41 is a mesophilic human pathogen that was isolated from milk.

NCBI tax id

  • NCBI tax id: 47714
  • Matching level: subspecies

strain history

@refhistory
8477<- I. G. Abo-Elnaga, 41 (Lactobacillus casei subsp. pseudoplantarum)
67770T. Mitsuoka S8-11 <-- DSM 20207 <-- I. G. Abo-Elnaga 41.

doi: 10.13145/bacdive6554.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Lacticaseibacillus
  • species: Lacticaseibacillus paracasei subsp. paracasei
  • full scientific name: Lacticaseibacillus paracasei subsp. paracasei (Collins et al. 1989) Zheng et al. 2020
  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus paracasei subsp. paracasei

@ref: 8477

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lacticaseibacillus

species: Lacticaseibacillus paracasei subsp. paracasei

full scientific name: Lacticaseibacillus paracasei subsp. paracasei (Collins et al. 1989) Zheng et al. 2020

strain designation: 41

type strain: no

Culture and growth conditions

culture medium

  • @ref: 8477
  • name: MRS MEDIUM (DSMZ Medium 11)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/11
  • composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8477positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

compound production

  • @ref: 8477
  • compound: lactic acid racemase

murein

  • @ref: 8477
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

Isolation, sampling and environmental information

isolation

@refsample type
8477milk
67770Milk

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Fluids#Milk
#Engineered#Food production#Dairy product

Safety information

risk assessment

  • @ref: 8477
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactobacillus paracasei strain DSM 202071597.16wgspatric1597
66792Lacticaseibacillus paracasei DSM 202072645727808draftimg1597
67770Lacticaseibacillus paracasei DSM 20207GCA_000949485contigncbi1597

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno93.81no
gram-positiveyes94.61no
anaerobicno94.895no
aerobicno95.866no
halophileyes79.15no
spore-formingno91.036no
thermophileno97.674yes
glucose-utilyes92.362no
flagellatedno97.334no
glucose-fermentyes90.284no

External links

@ref: 8477

culture collection no.: DSM 20207, NCDO 1977, JCM 1161

straininfo link

  • @ref: 76025
  • straininfo: 49591

literature

  • topic: Metabolism
  • Pubmed-ID: 15795782
  • title: Biocatalytic racemisation of alpha-hydroxycarboxylic acids at physiological conditions.
  • authors: Glueck SM, Larissegger-Schnell B, Csar K, Kroutil W, Faber K
  • journal: Chem Commun (Camb)
  • DOI: 10.1039/b418786e
  • year: 2005
  • mesh: Carboxylic Acids/*chemistry, Catalysis, Isomerism, Lactobacillus/chemistry/metabolism, Molecular Structure, Oxidation-Reduction

Reference

@idauthorscataloguedoi/urltitle
8477Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20207)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20207
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
76025Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49591.1StrainInfo: A central database for resolving microbial strain identifiers