Strain identifier

BacDive ID: 6553

Type strain: No

Species: Lacticaseibacillus paracasei subsp. paracasei

Strain Designation: C 17

Strain history: ATCC 27216 <-- M. Rogosa C17.

NCBI tax ID(s): 47714 (subspecies)

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General

@ref: 8432

BacDive-ID: 6553

DSM-Number: 20020

keywords: 16S sequence, Bacteria, mesophilic, human pathogen

description: Lacticaseibacillus paracasei subsp. paracasei C 17 is a mesophilic human pathogen that was isolated from saliva.

NCBI tax id

  • NCBI tax id: 47714
  • Matching level: subspecies

strain history

@refhistory
8432<- ATCC <- M. Rogosa, C 17
67770ATCC 27216 <-- M. Rogosa C17.

doi: 10.13145/bacdive6553.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Lacticaseibacillus
  • species: Lacticaseibacillus paracasei subsp. paracasei
  • full scientific name: Lacticaseibacillus paracasei subsp. paracasei (Collins et al. 1989) Zheng et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus paracasei subsp. paracasei

@ref: 8432

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lacticaseibacillus

species: Lacticaseibacillus paracasei subsp. paracasei

full scientific name: Lacticaseibacillus paracasei subsp. paracasei (Collins et al. 1989) Zheng et al. 2020

strain designation: C 17

type strain: no

Culture and growth conditions

culture medium

  • @ref: 8432
  • name: MRS MEDIUM (DSMZ Medium 11)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/11
  • composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8432positivegrowth30mesophilic
52248positivegrowth37mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

murein

  • @ref: 8432
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose+builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose+builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin+builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin+builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol+builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol+builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
8432-----+----++++--+-++--+++++++--+++-----++-+-------

Isolation, sampling and environmental information

isolation

@refsample type
8432saliva
52248Child saliva
67770Saliva of a child

isolation source categories

  • Cat1: #Host Body Product
  • Cat2: #Oral cavity and Airways
  • Cat3: #Saliva

taxonmaps

  • @ref: 69479
  • File name: preview.99_113.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_88;97_93;98_102;99_113&stattab=map
  • Last taxonomy: Lactobacillaceae
  • 16S sequence: D16548
  • Sequence Identity:
  • Total samples: 44444
  • soil counts: 1801
  • aquatic counts: 2397
  • animal counts: 39363
  • plant counts: 883

Safety information

risk assessment

  • @ref: 8432
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Lactobacillus casei gene for 16S rRNA
  • accession: D16548
  • length: 1521
  • database: ena
  • NCBI tax ID: 47714

GC content

  • @ref: 8432
  • GC-content: 46.6

External links

@ref: 8432

culture collection no.: CCUG 34680, DSM 20020, ATCC 27216, NCDO 2713, JCM 1133, BCRC 12188, CECT 981, KCTC 3165, NCFB 2713, NRIC 1046

straininfo link

  • @ref: 76024
  • straininfo: 3336

literature

  • topic: Metabolism
  • Pubmed-ID: 24936375
  • title: Difference in Degradation Patterns on Inulin-type Fructans among Strains of Lactobacillus delbrueckii and Lactobacillus paracasei.
  • authors: Tsujikawa Y, Nomoto R, Osawa R
  • journal: Biosci Microbiota Food Health
  • DOI: 10.12938/bmfh.32.157
  • year: 2013

Reference

@idauthorscataloguedoi/urltitle
8432Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20020)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20020
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
52248Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 34680)https://www.ccug.se/strain?id=34680
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76024Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID3336.1StrainInfo: A central database for resolving microbial strain identifiers