Strain identifier
BacDive ID: 6552
Type strain:
Species: Lacticaseibacillus paracasei subsp. paracasei
Strain Designation: 40
Strain history: CIP <- 1987, DSM <- I.G. Abo-Elnaga: strain 40, Lactobacillus casei subsp. pseudoplantarum
NCBI tax ID(s): 47714 (subspecies)
General
@ref: 8423
BacDive-ID: 6552
DSM-Number: 20008
keywords: 16S sequence, Bacteria, mesophilic, human pathogen
description: Lacticaseibacillus paracasei subsp. paracasei 40 is a mesophilic human pathogen that was isolated from milking machine.
NCBI tax id
- NCBI tax id: 47714
- Matching level: subspecies
strain history
@ref | history |
---|---|
8423 | <- I. G. Abo-Elnaga, 40 (Lactobacillus casei subsp. pseudoplantarum) |
67770 | T. Mitsuoka S8-7 <-- DSM 20008 <-- I. G. Abo-Elnaga 40. |
117200 | CIP <- 1987, DSM <- I.G. Abo-Elnaga: strain 40, Lactobacillus casei subsp. pseudoplantarum |
doi: 10.13145/bacdive6552.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Lacticaseibacillus
- species: Lacticaseibacillus paracasei subsp. paracasei
- full scientific name: Lacticaseibacillus paracasei subsp. paracasei (Collins et al. 1989) Zheng et al. 2020
synonyms
- @ref: 20215
- synonym: Lactobacillus paracasei subsp. paracasei
@ref: 8423
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Lacticaseibacillus
species: Lacticaseibacillus paracasei subsp. paracasei
full scientific name: Lacticaseibacillus paracasei subsp. paracasei (Collins et al. 1989) Zheng et al. 2020
strain designation: 40
type strain: no
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
8423 | MRS MEDIUM (DSMZ Medium 11) | yes | https://mediadive.dsmz.de/medium/11 | Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water |
35467 | MEDIUM 40- for Lactobacillus and Leuconostoc | yes | Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g) | |
117200 | CIP Medium 40 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
8423 | positive | growth | 30 | mesophilic |
35467 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
compound production
- @ref: 8423
- compound: lactic acid racemase
murein
- @ref: 8423
- murein short key: A11.31
- type: A4alpha L-Lys-D-Asp
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | + | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | + | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | + | builds acid from | 32528 |
68371 | gentiobiose | + | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | + | builds acid from | 6731 |
68371 | inulin | + | builds acid from | 15443 |
68371 | trehalose | + | builds acid from | 27082 |
68371 | sucrose | + | builds acid from | 17992 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | lactose | + | builds acid from | 17716 |
68371 | maltose | + | builds acid from | 17306 |
68371 | cellobiose | + | builds acid from | 17057 |
68371 | salicin | + | builds acid from | 17814 |
68371 | esculin | + | builds acid from | 4853 |
68371 | arbutin | + | builds acid from | 18305 |
68371 | amygdalin | + | builds acid from | 27613 |
68371 | N-acetylglucosamine | + | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | + | builds acid from | 17924 |
68371 | D-mannitol | + | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | + | builds acid from | 17266 |
68371 | D-mannose | + | builds acid from | 16024 |
68371 | D-fructose | + | builds acid from | 15824 |
68371 | D-glucose | + | builds acid from | 17634 |
68371 | D-galactose | + | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | - | builds acid from | 65327 |
68371 | D-ribose | + | builds acid from | 16988 |
68371 | L-arabinose | - | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | - | builds acid from | 17754 |
API 50CHac
@ref | Q | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
8423 | - | - | - | - | - | + | - | - | - | - | + | + | + | + | + | - | - | - | + | + | - | - | + | + | + | + | + | + | + | + | - | + | + | + | + | - | - | - | - | + | + | - | + | - | - | - | - | + | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
8423 | milking machine |
52247 | Milking machine |
67770 | Milking machine |
117200 | Other, Milking machine |
isolation source categories
- Cat1: #Engineered
- Cat2: #Industrial
- Cat3: #Engineered product
taxonmaps
- @ref: 69479
- File name: preview.99_113.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_88;97_93;98_102;99_113&stattab=map
- Last taxonomy: Lactobacillaceae
- 16S sequence: D16549
- Sequence Identity:
- Total samples: 44444
- soil counts: 1801
- aquatic counts: 2397
- animal counts: 39363
- plant counts: 883
Safety information
risk assessment
@ref | pathogenicity human | biosafety level | biosafety level comment |
---|---|---|---|
8423 | yes, in single cases | 1 | Risk group (German classification) |
117200 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Lactobacillus casei ATCC 25598 16S ribosomal RNA gene, partial sequence | AF429520 | 507 | ena | 1582 |
20218 | Lactobacillus casei strain ATCC 25598 16S ribosomal RNA gene, partial sequence; 16S-23S intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | AF429607 | 538 | ena | 1582 |
67770 | Lactobacillus casei gene for 16S rRNA | D16549 | 1521 | ena | 47714 |
GC content
- @ref: 8423
- GC-content: 44.9
External links
@ref: 8423
culture collection no.: DSM 20008, ATCC 25598, NCDO 2743, NCIB 9713, CCUG 34678, JCM 1181, BCRC 12193, CIP 102993, NCIMB 9713
straininfo link
- @ref: 76023
- straininfo: 3334
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Metabolism | 22691477 | Effects of bile salt deconjugation by probiotic strains on the survival of antibiotic-resistant foodborne pathogens under simulated gastric conditions. | He X, Zou Y, Cho Y, Ahn J | J Food Prot | 10.4315/0362-028X.JFP-11-456 | 2012 | *Antibiosis, Bifidobacterium/metabolism/*physiology, Bile Acids and Salts/*metabolism, Drug Resistance, Bacterial, Food Microbiology, Hydrogen-Ion Concentration, Lactobacillus/metabolism/*physiology, Leuconostoc/metabolism/*physiology, Probiotics, Salmonella typhimurium/drug effects/*growth & development, Species Specificity, Staphylococcus aureus/drug effects/*growth & development | Biotechnology |
Enzymology | 23399269 | Applied development of crude enzyme from Bacillus cereus in prebiotics and microbial community changes in soil. | Liang TW, Liu CP, Wu C, Wang SL | Carbohydr Polym | 10.1016/j.carbpol.2012.11.097 | 2012 | Bacillus cereus/cytology/*enzymology, Chitinases/*metabolism, Chitosan/chemistry/metabolism, Dose-Response Relationship, Drug, Extracellular Space/enzymology, Geologic Sediments/microbiology, Glycoside Hydrolases/*metabolism, Hydrolysis, Lactobacillus/drug effects/growth & development, Oligosaccharides/chemistry/pharmacology, *Prebiotics, Rivers/microbiology, *Soil Microbiology | Metabolism |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
8423 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20008) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-20008 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
35467 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/14740 | ||||
52247 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 34678) | https://www.ccug.se/strain?id=34678 | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68371 | Automatically annotated from API 50CH acid | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
76023 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID3334.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
117200 | Curators of the CIP | Collection of Institut Pasteur (CIP 102993) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102993 |