Strain identifier

BacDive ID: 6552

Type strain: No

Species: Lacticaseibacillus paracasei subsp. paracasei

Strain Designation: 40

Strain history: CIP <- 1987, DSM <- I.G. Abo-Elnaga: strain 40, Lactobacillus casei subsp. pseudoplantarum

NCBI tax ID(s): 47714 (subspecies)

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General

@ref: 8423

BacDive-ID: 6552

DSM-Number: 20008

keywords: 16S sequence, Bacteria, mesophilic, human pathogen

description: Lacticaseibacillus paracasei subsp. paracasei 40 is a mesophilic human pathogen that was isolated from milking machine.

NCBI tax id

  • NCBI tax id: 47714
  • Matching level: subspecies

strain history

@refhistory
8423<- I. G. Abo-Elnaga, 40 (Lactobacillus casei subsp. pseudoplantarum)
67770T. Mitsuoka S8-7 <-- DSM 20008 <-- I. G. Abo-Elnaga 40.
117200CIP <- 1987, DSM <- I.G. Abo-Elnaga: strain 40, Lactobacillus casei subsp. pseudoplantarum

doi: 10.13145/bacdive6552.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Lacticaseibacillus
  • species: Lacticaseibacillus paracasei subsp. paracasei
  • full scientific name: Lacticaseibacillus paracasei subsp. paracasei (Collins et al. 1989) Zheng et al. 2020
  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus paracasei subsp. paracasei

@ref: 8423

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lacticaseibacillus

species: Lacticaseibacillus paracasei subsp. paracasei

full scientific name: Lacticaseibacillus paracasei subsp. paracasei (Collins et al. 1989) Zheng et al. 2020

strain designation: 40

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8423MRS MEDIUM (DSMZ Medium 11)yeshttps://mediadive.dsmz.de/medium/11Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
35467MEDIUM 40- for Lactobacillus and LeuconostocyesDistilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
117200CIP Medium 40yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40

culture temp

@refgrowthtypetemperaturerange
8423positivegrowth30mesophilic
35467positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

compound production

  • @ref: 8423
  • compound: lactic acid racemase

murein

  • @ref: 8423
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose+builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose+builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose+builds acid from6731
68371inulin+builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin+builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol+builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose+builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
8423-----+----+++++---++--++++++++-++++----++-+----+--

Isolation, sampling and environmental information

isolation

@refsample type
8423milking machine
52247Milking machine
67770Milking machine
117200Other, Milking machine

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Industrial
  • Cat3: #Engineered product

taxonmaps

  • @ref: 69479
  • File name: preview.99_113.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_88;97_93;98_102;99_113&stattab=map
  • Last taxonomy: Lactobacillaceae
  • 16S sequence: D16549
  • Sequence Identity:
  • Total samples: 44444
  • soil counts: 1801
  • aquatic counts: 2397
  • animal counts: 39363
  • plant counts: 883

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
8423yes, in single cases1Risk group (German classification)
1172001Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Lactobacillus casei ATCC 25598 16S ribosomal RNA gene, partial sequenceAF429520507ena1582
20218Lactobacillus casei strain ATCC 25598 16S ribosomal RNA gene, partial sequence; 16S-23S intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceAF429607538ena1582
67770Lactobacillus casei gene for 16S rRNAD165491521ena47714

GC content

  • @ref: 8423
  • GC-content: 44.9

External links

@ref: 8423

culture collection no.: DSM 20008, ATCC 25598, NCDO 2743, NCIB 9713, CCUG 34678, JCM 1181, BCRC 12193, CIP 102993, NCIMB 9713

straininfo link

  • @ref: 76023
  • straininfo: 3334

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism22691477Effects of bile salt deconjugation by probiotic strains on the survival of antibiotic-resistant foodborne pathogens under simulated gastric conditions.He X, Zou Y, Cho Y, Ahn JJ Food Prot10.4315/0362-028X.JFP-11-4562012*Antibiosis, Bifidobacterium/metabolism/*physiology, Bile Acids and Salts/*metabolism, Drug Resistance, Bacterial, Food Microbiology, Hydrogen-Ion Concentration, Lactobacillus/metabolism/*physiology, Leuconostoc/metabolism/*physiology, Probiotics, Salmonella typhimurium/drug effects/*growth & development, Species Specificity, Staphylococcus aureus/drug effects/*growth & developmentBiotechnology
Enzymology23399269Applied development of crude enzyme from Bacillus cereus in prebiotics and microbial community changes in soil.Liang TW, Liu CP, Wu C, Wang SLCarbohydr Polym10.1016/j.carbpol.2012.11.0972012Bacillus cereus/cytology/*enzymology, Chitinases/*metabolism, Chitosan/chemistry/metabolism, Dose-Response Relationship, Drug, Extracellular Space/enzymology, Geologic Sediments/microbiology, Glycoside Hydrolases/*metabolism, Hydrolysis, Lactobacillus/drug effects/growth & development, Oligosaccharides/chemistry/pharmacology, *Prebiotics, Rivers/microbiology, *Soil MicrobiologyMetabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8423Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20008)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20008
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
35467Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14740
52247Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 34678)https://www.ccug.se/strain?id=34678
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
76023Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID3334.1StrainInfo: A central database for resolving microbial strain identifiers
117200Curators of the CIPCollection of Institut Pasteur (CIP 102993)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102993