Strain identifier

BacDive ID: 6528

Type strain: No

Species: Companilactobacillus farciminis

Strain history: CIP <- 1987, DSM, Lactobacillus alimentarius <- G. Reuter, biotype B3

NCBI tax ID(s): 1612 (species)

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General

@ref: 8458

BacDive-ID: 6528

DSM-Number: 20182

keywords: Bacteria, facultative anaerobe, mesophilic, Gram-positive, rod-shaped

description: Companilactobacillus farciminis DSM 20182 is a facultative anaerobe, mesophilic, Gram-positive bacterium that was isolated from marinated meat product.

NCBI tax id

  • NCBI tax id: 1612
  • Matching level: species

strain history

@refhistory
8458<- G. Reuter, Lev II
119280CIP <- 1987, DSM, Lactobacillus alimentarius <- G. Reuter, biotype B3

doi: 10.13145/bacdive6528.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Companilactobacillus
  • species: Companilactobacillus farciminis
  • full scientific name: Companilactobacillus farciminis (Reuter 1983 ex Reuter 1970) Zheng et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus farciminis

@ref: 8458

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Companilactobacillus

species: Companilactobacillus farciminis

full scientific name: Lactobacillus sp.

type strain: no

Morphology

cell morphology

  • @ref: 119280
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8458MRS MEDIUM (DSMZ Medium 11)yeshttps://mediadive.dsmz.de/medium/11Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
35466MEDIUM 40- for Lactobacillus and LeuconostocyesDistilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
119280CIP Medium 40yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40

culture temp

@refgrowthtypetemperature
8458positivegrowth30
35466positivegrowth37
119280positivegrowth15-37
119280nogrowth10
119280nogrowth45

Physiology and metabolism

oxygen tolerance

  • @ref: 119280
  • oxygen tolerance: facultative anaerobe

murein

  • @ref: 8458
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11928017632nitrate-reduction
11928016301nitrite-reduction
11928017632nitrate+respiration
68371Potassium 5-ketogluconate-builds acid from
6837118305arbutin+builds acid from
6837127613amygdalin-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose+builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837117992sucrose+builds acid from
6837128053melibiose-builds acid from
6837117306maltose-builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
6837159640N-acetylglucosamine+builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from

metabolite tests

  • @ref: 119280
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-chymotrypsin-3.4.21.1
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382valine arylamidase-
68382leucine arylamidase-3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)-
119280oxidase-
119280alcohol dehydrogenase-1.1.1.1
119280catalase-1.11.1.6
119280lysine decarboxylase-4.1.1.18
119280ornithine decarboxylase-4.1.1.17
68382acid phosphatase+3.1.3.2
68382alkaline phosphatase+3.1.3.1

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119280-+--------++---+----

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
119280---------++++--------+-++/----+/--++/-------+/-----------

Isolation, sampling and environmental information

isolation

@refsample type
8458marinated meat product
119280Food, Marinated meat product

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Food production
  • Cat3: #Meat

Safety information

risk assessment

  • @ref: 119280
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

GC content

  • @ref: 8458
  • GC-content: 35.0

External links

@ref: 8458

culture collection no.: DSM 20182, Lev II, CIP 102987, NCIMB 11954

straininfo link

  • @ref: 76000
  • straininfo: 92278

Reference

@idauthorscataloguedoi/urltitle
8458Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20182)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20182
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
35466Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14734
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
76000Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92278.1StrainInfo: A central database for resolving microbial strain identifiers
119280Curators of the CIPCollection of Institut Pasteur (CIP 102987)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102987