Strain identifier
BacDive ID: 6511
Type strain: 
Species: Ligilactobacillus ruminis
Strain Designation: RF 2
Strain history: T. Mitsuoka S8-20 <-- DSM 20404 <-- M. E. Sharpe RF2.
NCBI tax ID(s): 1623 (species)
General
@ref: 8790
BacDive-ID: 6511
DSM-Number: 20404
keywords: Bacteria, anaerobe, mesophilic
description: Ligilactobacillus ruminis RF 2 is an anaerobe, mesophilic bacterium that was isolated from bovine rumen.
NCBI tax id
- NCBI tax id: 1623
- Matching level: species
strain history
| @ref | history |
|---|---|
| 8790 | <- M.E. Sharpe, RF 2 |
| 67770 | T. Mitsuoka S8-20 <-- DSM 20404 <-- M. E. Sharpe RF2. |
doi: 10.13145/bacdive6511.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Ligilactobacillus
- species: Ligilactobacillus ruminis
- full scientific name: Ligilactobacillus ruminis (Sharpe et al. 1973) Zheng et al. 2020
synonyms
- @ref: 20215
- synonym: Lactobacillus ruminis
@ref: 8790
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Ligilactobacillus
species: Ligilactobacillus ruminis
full scientific name: Ligilactobacillus ruminis (Sharpe et al. 1973) Zheng et al. 2020
strain designation: RF 2
type strain: no
Culture and growth conditions
culture medium
- @ref: 8790
- name: MRS MEDIUM WITH CYSTEINE (DSMZ Medium 232)
- growth: yes
- link: https://mediadive.dsmz.de/medium/232
- composition: Name: MRS MEDIUM WITH CYSTEINE (DSMZ Medium 232) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)2 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 8790 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 8790
- oxygen tolerance: anaerobe
murein
- @ref: 8790
- murein short key: A31
- type: A1gamma m-Dpm-direct
Isolation, sampling and environmental information
isolation
| @ref | sample type |
|---|---|
| 8790 | bovine rumen |
| 67770 | Bovine rumen |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Bovinae (Cow, Cattle) |
| #Host Body-Site | #Organ | #Rumen |
Safety information
risk assessment
- @ref: 8790
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
GC content
- @ref: 8790
- GC-content: 43.7
External links
@ref: 8790
culture collection no.: DSM 20404, ATCC 27781, JCM 1182, LMG 11461, NCFB 2187
straininfo link
- @ref: 75983
- straininfo: 3364
literature
- topic: Pathogenicity
- Pubmed-ID: 28450859
- title: A Comparative Characterization of Different Host-sourced Lactobacillus ruminis Strains and Their Adhesive, Inhibitory, and Immunomodulating Functions.
- authors: Yu X, Avall-Jaaskelainen S, Koort J, Lindholm A, Rintahaka J, von Ossowski I, Palva A, Hynonen U
- journal: Front Microbiol
- DOI: 10.3389/fmicb.2017.00657
- year: 2017
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 8790 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20404) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-20404 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 75983 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID3364.1 | StrainInfo: A central database for resolving microbial strain identifiers |