Strain identifier
BacDive ID: 6481
Type strain: 
Species: Fructilactobacillus lindneri
Strain Designation: IX 6a
Strain history: <- W. Back, IX 6a
NCBI tax ID(s): 53444 (species)
version 8.1 (current version)
General
@ref: 9013
BacDive-ID: 6481
DSM-Number: 20692
keywords: genome sequence, Bacteria, mesophilic
description: Fructilactobacillus lindneri IX 6a is a mesophilic bacterium that was isolated from spoilt beer.
NCBI tax id
- NCBI tax id: 53444
- Matching level: species
strain history
- @ref: 9013
- history: <- W. Back, IX 6a
doi: 10.13145/bacdive6481.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Fructilactobacillus
- species: Fructilactobacillus lindneri
- full scientific name: Fructilactobacillus lindneri (Back et al. 1997 ex Henneberg 1901) Zheng et al. 2020
synonyms
- @ref: 20215
- synonym: Lactobacillus lindneri
@ref: 9013
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Fructilactobacillus
species: Fructilactobacillus lindneri
full scientific name: Fructilactobacillus lindneri (Back et al. 1997) Zheng et al. 2020
strain designation: IX 6a
type strain: no
Culture and growth conditions
culture medium
- @ref: 9013
- name: PEDIOCOCCUS DAMNOSUS MEDIUM (DSMZ Medium 231)
- growth: yes
- link: https://mediadive.dsmz.de/medium/231
- composition: Name: PEDIOCOCCUS DAMNOSUS MEDIUM (DSMZ Medium 231) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Yeast extract 5.0 g/l Na-acetate 5.0 g/l K2HPO4 2.0 g/l (NH4)3 citrate 2.0 g/l Tween 80 1.0 g/l Cysteine hydrochloride 0.5 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
culture temp
- @ref: 9013
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
murein
- @ref: 9013
- murein short key: A11.31
- type: A4alpha L-Lys-D-Asp
Isolation, sampling and environmental information
isolation
- @ref: 9013
- sample type: spoilt beer
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Fermented |
| #Environmental | #Microbial community | |
| #Engineered | #Food production | #Beverage |
Safety information
risk assessment
- @ref: 9013
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Lactobacillus lindneri strain TMW 1.1285
- accession: 53444.31
- assembly level: wgs
- database: patric
- NCBI tax ID: 53444
GC content
- @ref: 9013
- GC-content: 36.3
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| gram-positive | yes | 95.855 | no |
| anaerobic | no | 90.75 | no |
| halophile | yes | 94.171 | no |
| spore-forming | no | 95.75 | no |
| glucose-util | yes | 88.021 | no |
| thermophile | no | 98.998 | yes |
| motile | no | 96.682 | no |
| flagellated | no | 98.868 | no |
| aerobic | no | 91.908 | no |
| glucose-ferment | yes | 82.588 | no |
External links
@ref: 9013
culture collection no.: DSM 20692
straininfo link
- @ref: 75954
- straininfo: 13705
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Enzymology | 9090105 | A specific oligonucleotide primer for the rapid detection of Lactobacillus lindneri by polymerase chain reaction. | Yasui T, Okamoto T, Taguchi H | Can J Microbiol | 10.1139/m97-021 | 1997 | Antibodies, Bacterial/immunology, Base Sequence, Beer/microbiology, DNA Primers/*genetics, DNA, Bacterial/analysis/genetics, Electrophoresis, Agar Gel, Immunodiffusion, Lactobacillus/*genetics/immunology/*isolation & purification, Molecular Sequence Data, Pediococcus/genetics, Polymerase Chain Reaction/*methods, RNA, Ribosomal, 16S/*genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid | Phylogeny |
| Phylogeny | 16151091 | Isolation of a hop-sensitive variant of Lactobacillus lindneri and identification of genetic markers for beer spoilage ability of lactic acid bacteria. | Suzuki K, Iijima K, Ozaki K, Yamashita H | Appl Environ Microbiol | 10.1128/AEM.71.9.5089-5097.2005 | 2005 | Anti-Bacterial Agents/pharmacology, Bacterial Proteins/*genetics/metabolism, Beer/*microbiology, Drug Resistance, Bacterial/genetics, Food Contamination, Food Microbiology, *Genetic Markers, *Humulus, Lactobacillus/*classification/*drug effects/genetics/isolation & purification, Microbial Sensitivity Tests, Open Reading Frames/genetics, Sequence Analysis, DNA | Biotechnology |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 9013 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20692) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-20692 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 75954 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID13705.1 | StrainInfo: A central database for resolving microbial strain identifiers |