Strain identifier
BacDive ID: 6464
Type strain: 
Species: Fructilactobacillus fructivorans
Strain history: <- NCDO <- R.E. Kunkee
NCBI tax ID(s): 1614 (species)
version 9.3 (current version)
General
@ref: 8955
BacDive-ID: 6464
DSM-Number: 20607
keywords: genome sequence, Bacteria, mesophilic, Gram-positive
description: Fructilactobacillus fructivorans DSM 20607 is a mesophilic, Gram-positive bacterium that was isolated from wine.
NCBI tax id
- NCBI tax id: 1614
- Matching level: species
strain history
- @ref: 8955
- history: <- NCDO <- R.E. Kunkee
doi: 10.13145/bacdive6464.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Fructilactobacillus
- species: Fructilactobacillus fructivorans
- full scientific name: Fructilactobacillus fructivorans (Charlton et al. 1934) Zheng et al. 2020
synonyms
@ref synonym 20215 Lactobacillus fructivorans 20215 Lactobacillus trichodes 20215 Lactobacillus heterohiochii 20215 Lactobacillus homohiochii
@ref: 8955
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Fructilactobacillus
species: Fructilactobacillus fructivorans
full scientific name: Fructilactobacillus fructivorans (Charlton et al. 1934) Zheng et al. 2020
type strain: no
Morphology
cell morphology
- @ref: 125438
- gram stain: positive
- confidence: 91.445
Culture and growth conditions
culture medium
- @ref: 8955
- name: KUNKEE MEDIUM (DSMZ Medium 368)
- growth: yes
- link: https://mediadive.dsmz.de/medium/368
- composition: Name: KUNKEE MEDIUM (DSMZ Medium 368) Composition: Tryptone 20.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Peptone 5.0 g/l Tween 80 Tomato juice Distilled water
culture temp
- @ref: 8955
- growth: positive
- type: growth
- temperature: 25
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: microaerophile
- confidence: 97.7
spore formation
- @ref: 125438
- spore formation: no
- confidence: 90.277
murein
- @ref: 8955
- murein short key: A11.31
- type: A4alpha L-Lys-D-Asp
Isolation, sampling and environmental information
isolation
- @ref: 8955
- sample type: wine
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Beverage |
| #Engineered | #Food production | #Fermented |
| #Host | #Plants | #Shrub (Scrub) |
| #Host Body-Site | #Plant | #Fruit (Seed) |
Safety information
risk assessment
- @ref: 8955
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Fructilactobacillus fructivorans ATCC 27394 | GCA_001437175 | scaffold | ncbi | 1614 |
| 66792 | Lactobacillus fructivorans strain ATCC 27394 | 1614.11 | wgs | patric | 1614 |
| 66792 | Fructilactobacillus fructivorans ATCC 27394 | 2667528067 | draft | img | 1614 |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 91.445 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 77.298 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 92.11 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 90.277 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 92.767 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 88 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 85.9 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 72.5 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 84.6 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | microaerophile | 97.7 |
External links
@ref: 8955
culture collection no.: DSM 20607, ATCC 27394, NCDO 1985
straininfo link
- @ref: 75936
- straininfo: 9753
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 8955 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20607) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-20607 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 75936 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID9753.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |