Strain identifier
BacDive ID: 6463
Type strain:
Species: Fructilactobacillus fructivorans
Strain Designation: H1
Strain history: ATCC 15435 <-- K. Kitahara H1 <-- T. Kaneko.
NCBI tax ID(s): 1614 (species)
General
@ref: 8754
BacDive-ID: 6463
DSM-Number: 20350
keywords: genome sequence, Bacteria, mesophilic
description: Fructilactobacillus fructivorans H1 is a mesophilic bacterium that was isolated from spoilt sake.
NCBI tax id
- NCBI tax id: 1614
- Matching level: species
strain history
@ref | history |
---|---|
8754 | <- K. Nosiro <- K. Kitahara, H1 (Lactobacillus heterohiochii) |
67770 | ATCC 15435 <-- K. Kitahara H1 <-- T. Kaneko. |
doi: 10.13145/bacdive6463.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Fructilactobacillus
- species: Fructilactobacillus fructivorans
- full scientific name: Fructilactobacillus fructivorans (Charlton et al. 1934) Zheng et al. 2020
synonyms
@ref synonym 20215 Lactobacillus trichodes 20215 Lactobacillus heterohiochii 20215 Lactobacillus homohiochii 20215 Lactobacillus fructivorans
@ref: 8754
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Fructilactobacillus
species: Fructilactobacillus fructivorans
full scientific name: Fructilactobacillus fructivorans (Charlton et al. 1934) Zheng et al. 2020
strain designation: H1
type strain: no
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | no | 94.829 | |
69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 8754
- name: LACTOBACILLUS MEDIUM II (DSMZ Medium 93)
- growth: yes
- link: https://mediadive.dsmz.de/medium/93
- composition: Name: LACTOBACILLUS MEDIUM II (DSMZ Medium 93) Composition: Na-acetate 20.0 g/l Glucose 20.0 g/l Agar 15.0 g/l Casein peptone 10.0 g/l Yeast extract 5.0 g/l Meat extract 2.0 g/l K2HPO4 0.5 g/l KH2PO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l DL-mevalonic acid 0.03 g/l FeSO4 x 7 H2O 0.01 g/l MnSO4 x H2O 0.0075 g/l Tween 80 Ethanol Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
8754 | positive | growth | 26 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.999 |
murein
- @ref: 8754
- murein short key: A11.31
- type: A4alpha L-Lys-D-Asp
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | - | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | - | builds acid from | 32528 |
68371 | gentiobiose | - | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | - | builds acid from | 27082 |
68371 | sucrose | - | builds acid from | 17992 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | lactose | - | builds acid from | 17716 |
68371 | maltose | - | builds acid from | 17306 |
68371 | cellobiose | - | builds acid from | 17057 |
68371 | salicin | - | builds acid from | 17814 |
68371 | esculin | - | builds acid from | 4853 |
68371 | arbutin | - | builds acid from | 18305 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | - | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | - | builds acid from | 17924 |
68371 | D-mannitol | - | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | - | builds acid from | 16024 |
68371 | D-fructose | - | builds acid from | 15824 |
68371 | D-glucose | + | builds acid from | 17634 |
68371 | D-galactose | - | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | - | builds acid from | 65327 |
68371 | D-ribose | + | builds acid from | 16988 |
68371 | L-arabinose | - | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | - | builds acid from | 17754 |
API 50CHac
@ref | Q | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
8754 | - | - | - | - | - | + | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
8754 | spoilt sake |
67770 | Spoiled sake |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Food production | #Fermented |
#Environmental | #Microbial community | |
#Engineered | #Food production | #Beverage |
Safety information
risk assessment
- @ref: 8754
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Lactobacillus fructivorans strain DSM 20350 | 1614.10 | wgs | patric | 1614 |
66792 | Fructilactobacillus fructivorans DSM 20350 | 2700989264 | draft | img | 1614 |
67770 | Fructilactobacillus fructivorans DSM 20350 | GCA_001436935 | scaffold | ncbi | 1614 |
GC content
- @ref: 8754
- GC-content: 38.3
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 96.61 | no |
gram-positive | yes | 95.306 | no |
anaerobic | no | 74.856 | no |
aerobic | no | 94.483 | no |
halophile | yes | 92.862 | no |
spore-forming | no | 97.6 | no |
thermophile | no | 99.264 | yes |
glucose-util | yes | 87.347 | no |
flagellated | no | 98.732 | no |
glucose-ferment | yes | 82.724 | no |
External links
@ref: 8754
culture collection no.: DSM 20350, ATCC 15435, JCM 1198, NRIC 1814
straininfo link
- @ref: 75935
- straininfo: 92169
literature
- topic: Phylogeny
- Pubmed-ID: 17609153
- title: New insertion sequence in Lactobacillus fructivorans strains isolated from spoiled sake.
- authors: Wada Y, Mizoguchi H
- journal: J Biosci Bioeng
- DOI: 10.1263/jbb.103.399
- year: 2007
- mesh: Base Sequence, DNA Transposable Elements/*genetics, DNA, Bacterial/*genetics, Lactobacillus/*classification/*genetics, Molecular Sequence Data, Sequence Homology, Nucleic Acid, Species Specificity, Wine/*microbiology
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
8754 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20350) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-20350 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
68371 | Automatically annotated from API 50CH acid | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
75935 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID92169.1 | StrainInfo: A central database for resolving microbial strain identifiers |