Strain identifier

BacDive ID: 6463

Type strain: No

Species: Fructilactobacillus fructivorans

Strain Designation: H1

Strain history: ATCC 15435 <-- K. Kitahara H1 <-- T. Kaneko.

NCBI tax ID(s): 1614 (species)

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General

@ref: 8754

BacDive-ID: 6463

DSM-Number: 20350

keywords: genome sequence, Bacteria, mesophilic

description: Fructilactobacillus fructivorans H1 is a mesophilic bacterium that was isolated from spoilt sake.

NCBI tax id

  • NCBI tax id: 1614
  • Matching level: species

strain history

@refhistory
8754<- K. Nosiro <- K. Kitahara, H1 (Lactobacillus heterohiochii)
67770ATCC 15435 <-- K. Kitahara H1 <-- T. Kaneko.

doi: 10.13145/bacdive6463.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Fructilactobacillus
  • species: Fructilactobacillus fructivorans
  • full scientific name: Fructilactobacillus fructivorans (Charlton et al. 1934) Zheng et al. 2020
  • synonyms

    @refsynonym
    20215Lactobacillus trichodes
    20215Lactobacillus heterohiochii
    20215Lactobacillus homohiochii
    20215Lactobacillus fructivorans

@ref: 8754

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Fructilactobacillus

species: Fructilactobacillus fructivorans

full scientific name: Fructilactobacillus fructivorans (Charlton et al. 1934) Zheng et al. 2020

strain designation: H1

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no94.829
69480100positive

Culture and growth conditions

culture medium

  • @ref: 8754
  • name: LACTOBACILLUS MEDIUM II (DSMZ Medium 93)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/93
  • composition: Name: LACTOBACILLUS MEDIUM II (DSMZ Medium 93) Composition: Na-acetate 20.0 g/l Glucose 20.0 g/l Agar 15.0 g/l Casein peptone 10.0 g/l Yeast extract 5.0 g/l Meat extract 2.0 g/l K2HPO4 0.5 g/l KH2PO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l DL-mevalonic acid 0.03 g/l FeSO4 x 7 H2O 0.01 g/l MnSO4 x H2O 0.0075 g/l Tween 80 Ethanol Distilled water

culture temp

@refgrowthtypetemperaturerange
8754positivegrowth26mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.999

murein

  • @ref: 8754
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
8754-----+-----+--------------------------------------

Isolation, sampling and environmental information

isolation

@refsample type
8754spoilt sake
67770Spoiled sake

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Fermented
#Environmental#Microbial community
#Engineered#Food production#Beverage

Safety information

risk assessment

  • @ref: 8754
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactobacillus fructivorans strain DSM 203501614.10wgspatric1614
66792Fructilactobacillus fructivorans DSM 203502700989264draftimg1614
67770Fructilactobacillus fructivorans DSM 20350GCA_001436935scaffoldncbi1614

GC content

  • @ref: 8754
  • GC-content: 38.3

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno96.61no
gram-positiveyes95.306no
anaerobicno74.856no
aerobicno94.483no
halophileyes92.862no
spore-formingno97.6no
thermophileno99.264yes
glucose-utilyes87.347no
flagellatedno98.732no
glucose-fermentyes82.724no

External links

@ref: 8754

culture collection no.: DSM 20350, ATCC 15435, JCM 1198, NRIC 1814

straininfo link

  • @ref: 75935
  • straininfo: 92169

literature

  • topic: Phylogeny
  • Pubmed-ID: 17609153
  • title: New insertion sequence in Lactobacillus fructivorans strains isolated from spoiled sake.
  • authors: Wada Y, Mizoguchi H
  • journal: J Biosci Bioeng
  • DOI: 10.1263/jbb.103.399
  • year: 2007
  • mesh: Base Sequence, DNA Transposable Elements/*genetics, DNA, Bacterial/*genetics, Lactobacillus/*classification/*genetics, Molecular Sequence Data, Sequence Homology, Nucleic Acid, Species Specificity, Wine/*microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
8754Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20350)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20350
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
75935Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92169.1StrainInfo: A central database for resolving microbial strain identifiers