Strain identifier

BacDive ID: 6463

Type strain: No

Species: Fructilactobacillus fructivorans

Strain Designation: H1

Strain history: ATCC 15435 <-- K. Kitahara H1 <-- T. Kaneko.

NCBI tax ID(s): 1614 (species)

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General

@ref: 8754

BacDive-ID: 6463

DSM-Number: 20350

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive

description: Fructilactobacillus fructivorans H1 is a mesophilic, Gram-positive bacterium that was isolated from spoilt sake.

NCBI tax id

  • NCBI tax id: 1614
  • Matching level: species

strain history

@refhistory
8754<- K. Nosiro <- K. Kitahara, H1 (Lactobacillus heterohiochii)
67770ATCC 15435 <-- K. Kitahara H1 <-- T. Kaneko.

doi: 10.13145/bacdive6463.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Fructilactobacillus
  • species: Fructilactobacillus fructivorans
  • full scientific name: Fructilactobacillus fructivorans (Charlton et al. 1934) Zheng et al. 2020

  • synonyms

    @refsynonym
    20215Lactobacillus fructivorans
    20215Lactobacillus trichodes
    20215Lactobacillus heterohiochii
    20215Lactobacillus homohiochii

@ref: 8754

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Fructilactobacillus

species: Fructilactobacillus fructivorans

full scientific name: Fructilactobacillus fructivorans (Charlton et al. 1934) Zheng et al. 2020

strain designation: H1

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
125438no90
12543891.844positive

Culture and growth conditions

culture medium

  • @ref: 8754
  • name: LACTOBACILLUS MEDIUM II (DSMZ Medium 93)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/93
  • composition: Name: LACTOBACILLUS MEDIUM II (DSMZ Medium 93) Composition: Na-acetate 20.0 g/l Glucose 20.0 g/l Agar 15.0 g/l Casein peptone 10.0 g/l Yeast extract 5.0 g/l Meat extract 2.0 g/l K2HPO4 0.5 g/l KH2PO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l DL-mevalonic acid 0.03 g/l FeSO4 x 7 H2O 0.01 g/l MnSO4 x H2O 0.0075 g/l Tween 80 Ethanol Distilled water

culture temp

@refgrowthtypetemperature
8754positivegrowth26
67770positivegrowth30

Physiology and metabolism

oxygen tolerance

  • @ref: 125439
  • oxygen tolerance: obligate aerobe
  • confidence: 98.5

spore formation

  • @ref: 125439
  • spore formation: no
  • confidence: 94.8

murein

  • @ref: 8754
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371amygdalin-builds acid from27613
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371D-fructose-builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose-builds acid from12936
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
8754-----+-----+--------------------------------------

Isolation, sampling and environmental information

isolation

@refsample type
8754spoilt sake
67770Spoiled sake

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Fermented
#Environmental#Microbial community
#Engineered#Food production#Beverage

Safety information

risk assessment

  • @ref: 8754
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 124043
  • description: Lactobacillus fructivorans gene for 16S rRNA, partial sequence, strain: JCM 1198.
  • accession: AB289116
  • length: 636
  • database: nuccore
  • NCBI tax ID: 1614

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactobacillus fructivorans strain DSM 203501614.10wgspatric1614
66792Fructilactobacillus fructivorans DSM 203502700989264draftimg1614
67770Fructilactobacillus fructivorans DSM 20350GCA_001436935scaffoldncbi1614

GC content

  • @ref: 8754
  • GC-content: 38.3

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes91.844no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no77.62no
125438spore-formingspore-formingAbility to form endo- or exosporesno89.777no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno93.267no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no92.063no
125438motile2+flagellatedAbility to perform flagellated movementno90no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno94.8
125439BacteriaNetmotilityAbility to perform movementno77.1
125439BacteriaNetgram_stainReaction to gram-stainingnegative69
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe98.5

External links

@ref: 8754

culture collection no.: DSM 20350, ATCC 15435, JCM 1198, NRIC 1814

straininfo link

  • @ref: 75935
  • straininfo: 92169

literature

  • topic: Phylogeny
  • Pubmed-ID: 17609153
  • title: New insertion sequence in Lactobacillus fructivorans strains isolated from spoiled sake.
  • authors: Wada Y, Mizoguchi H
  • journal: J Biosci Bioeng
  • DOI: 10.1263/jbb.103.399
  • year: 2007
  • mesh: Base Sequence, DNA Transposable Elements/*genetics, DNA, Bacterial/*genetics, Lactobacillus/*classification/*genetics, Molecular Sequence Data, Sequence Homology, Nucleic Acid, Species Specificity, Wine/*microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
8754Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20350)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20350
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
75935Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92169.1StrainInfo: A central database for resolving microbial strain identifiers
124043Isabel Schober, Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1