Strain identifier
BacDive ID: 6427
Type strain:
Species: Lacticaseibacillus rhamnosus
Strain history: CIP <- 1953, ATCC <- F.M. Strong, Lactobacillus casei subsp. rhamnosus
NCBI tax ID(s): 47715 (species)
General
@ref: 8433
BacDive-ID: 6427
DSM-Number: 20021
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Lacticaseibacillus rhamnosus DSM 20021 is an anaerobe, mesophilic bacterium of the family Lactobacillaceae.
NCBI tax id
- NCBI tax id: 47715
- Matching level: species
strain history
@ref | history |
---|---|
8433 | <- ATCC <- F.M. Strong |
67770 | ATCC 7469 <-- F. M. Strong (Lactobacillus casei). |
122183 | CIP <- 1953, ATCC <- F.M. Strong, Lactobacillus casei subsp. rhamnosus |
doi: 10.13145/bacdive6427.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Lacticaseibacillus
- species: Lacticaseibacillus rhamnosus
- full scientific name: Lacticaseibacillus rhamnosus (Hansen 1968) Zheng et al. 2020
synonyms
@ref synonym 20215 Lactobacillus casei subsp. rhamnosus 20215 Lactobacillus rhamnosus
@ref: 8433
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Lacticaseibacillus
species: Lacticaseibacillus rhamnosus
full scientific name: Lacticaseibacillus rhamnosus (Hansen 1968) Zheng et al. 2020
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | no | 95.992 | ||
69480 | 100 | positive | ||
122183 | no | positive | rod-shaped |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
8433 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
8433 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
8433 | MRS MEDIUM (DSMZ Medium 11) | yes | https://mediadive.dsmz.de/medium/11 | Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water |
41838 | MEDIUM 40- for Lactobacillus and Leuconostoc | yes | Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g) | |
122183 | CIP Medium 40 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=40 | |
122183 | CIP Medium 41 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=41 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
8433 | positive | growth | 37 | mesophilic |
41838 | positive | growth | 37 | mesophilic |
47413 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
122183 | positive | growth | 15-45 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
47413 | anaerobe |
47413 | microaerophile |
122183 | facultative anaerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.972 |
murein
- @ref: 8433
- murein short key: A11.31
- type: A4alpha L-Lys-D-Asp
observation
- @ref: 67770
- observation: Assay of Folic acid, riboflavin, panthothenic, nicotinic and glutamic acids, pyridoxal and arginine, azothiopurine and 6-mercaptopurine
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | + | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | + | builds acid from | 32528 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | + | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | + | builds acid from | 27082 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | lactose | + | builds acid from | 17716 |
68371 | cellobiose | + | builds acid from | 17057 |
68371 | salicin | + | builds acid from | 17814 |
68371 | esculin | + | builds acid from | 4853 |
68371 | arbutin | + | builds acid from | 18305 |
68371 | amygdalin | + | builds acid from | 27613 |
68371 | N-acetylglucosamine | + | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | + | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | + | builds acid from | 17924 |
68371 | D-mannitol | + | builds acid from | 16899 |
68371 | myo-inositol | - | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | + | builds acid from | 62345 |
68371 | L-sorbose | + | builds acid from | 17266 |
68371 | D-mannose | + | builds acid from | 16024 |
68371 | D-fructose | + | builds acid from | 15824 |
68371 | D-glucose | + | builds acid from | 17634 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | - | builds acid from | 65327 |
68371 | D-ribose | + | builds acid from | 16988 |
68371 | L-arabinose | - | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | - | builds acid from | 17754 |
122183 | nitrate | - | reduction | 17632 |
122183 | nitrite | - | reduction | 16301 |
122183 | nitrate | + | respiration | 17632 |
68379 | nitrate | - | reduction | 17632 |
68379 | esculin | + | hydrolysis | 4853 |
68379 | urea | - | hydrolysis | 16199 |
68379 | gelatin | - | hydrolysis | 5291 |
68379 | D-ribose | + | fermentation | 16988 |
68379 | D-xylose | - | fermentation | 65327 |
68379 | D-mannitol | + | fermentation | 16899 |
68379 | maltose | + | fermentation | 17306 |
68379 | lactose | + | fermentation | 17716 |
68379 | sucrose | + | fermentation | 17992 |
68379 | glycogen | - | fermentation | 28087 |
68374 | ornithine | - | degradation | 18257 |
68374 | arginine | - | hydrolysis | 29016 |
68374 | lysine | - | degradation | 25094 |
68374 | urea | - | hydrolysis | 16199 |
68374 | L-arabitol | - | builds acid from | 18403 |
68374 | D-galacturonic acid | - | builds acid from | 18024 |
68374 | Potassium 5-ketogluconate | - | builds acid from | |
68374 | D-mannitol | - | builds acid from | 16899 |
68374 | maltose | - | builds acid from | 17306 |
68374 | ribitol | - | builds acid from | 15963 |
68374 | palatinose | - | builds acid from | 18394 |
68374 | malonate | - | assimilation | 15792 |
68374 | tryptophan | - | energy source | 27897 |
68374 | D-glucose | - | builds acid from | 17634 |
68374 | sucrose | - | builds acid from | 17992 |
68374 | L-arabinose | - | builds acid from | 30849 |
68374 | D-arabitol | - | builds acid from | 18333 |
68374 | trehalose | - | builds acid from | 27082 |
68374 | L-rhamnose | - | builds acid from | 62345 |
68374 | myo-inositol | - | builds acid from | 17268 |
68374 | cellobiose | - | builds acid from | 17057 |
68374 | sorbitol | - | builds acid from | 30911 |
68381 | arginine | - | hydrolysis | 29016 |
68381 | D-ribose | + | builds acid from | 16988 |
68381 | D-mannitol | + | builds acid from | 16899 |
68381 | sorbitol | - | builds acid from | 30911 |
68381 | lactose | - | builds acid from | 17716 |
68381 | trehalose | + | builds acid from | 27082 |
68381 | raffinose | - | builds acid from | 16634 |
68381 | sucrose | + | builds acid from | 17992 |
68381 | L-arabinose | - | builds acid from | 30849 |
68381 | D-arabitol | - | builds acid from | 18333 |
68381 | alpha-cyclodextrin | - | builds acid from | 40585 |
68381 | hippurate | + | hydrolysis | 606565 |
68381 | glycogen | - | builds acid from | 28087 |
68381 | pullulan | - | builds acid from | 27941 |
68381 | maltose | - | builds acid from | 17306 |
68381 | melibiose | - | builds acid from | 28053 |
68381 | melezitose | + | builds acid from | 6731 |
68381 | methyl beta-D-glucopyranoside | - | builds acid from | 320055 |
68381 | D-tagatose | + | builds acid from | 16443 |
68381 | urea | - | hydrolysis | 16199 |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68374 | 35581 | indole | no |
68381 | 15688 | acetoin | yes |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
---|---|---|---|---|
68381 | 15688 | acetoin | + | |
68374 | 35581 | indole | - | |
122183 | 15688 | acetoin | + |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | + | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | + | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | + | 3.4.11.3 |
68382 | valine arylamidase | + | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68381 | urease | - | 3.5.1.5 |
68381 | beta-mannosidase | - | 3.2.1.25 |
68381 | glycyl tryptophan arylamidase | - | |
68381 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68381 | pyrrolidonyl arylamidase | + | 3.4.19.3 |
68381 | beta-galactosidase | + | 3.2.1.23 |
68381 | alkaline phosphatase | - | 3.1.3.1 |
68381 | alpha-galactosidase | - | 3.2.1.22 |
68381 | beta-glucuronidase | - | 3.2.1.31 |
68381 | beta-glucosidase | + | 3.2.1.21 |
68381 | arginine dihydrolase | - | 3.5.3.6 |
68374 | L-aspartate arylamidase | - | 3.4.11.21 |
68374 | alpha-maltosidase | - | |
68374 | alpha-galactosidase | - | 3.2.1.22 |
68374 | alpha-glucosidase | - | 3.2.1.20 |
68374 | beta-galactosidase | + | 3.2.1.23 |
68374 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68374 | beta-glucuronidase | - | 3.2.1.31 |
68374 | beta-glucosidase | + | 3.2.1.21 |
68374 | lipase | + | |
68374 | urease | - | 3.5.1.5 |
68374 | lysine decarboxylase | - | 4.1.1.18 |
68374 | arginine dihydrolase | - | 3.5.3.6 |
68374 | ornithine decarboxylase | - | 4.1.1.17 |
68379 | catalase | - | 1.11.1.6 |
68379 | gelatinase | - | |
68379 | urease | - | 3.5.1.5 |
68379 | beta-glucosidase | + | 3.2.1.21 |
68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68379 | alpha-glucosidase | + | 3.2.1.20 |
68379 | beta-galactosidase | + | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | + | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | + | 3.4.19.3 |
68379 | pyrazinamidase | - | 3.5.1.B15 |
122183 | oxidase | - | |
122183 | alcohol dehydrogenase | - | 1.1.1.1 |
122183 | catalase | - | 1.11.1.6 |
122183 | lysine decarboxylase | - | 4.1.1.18 |
122183 | ornithine decarboxylase | - | 4.1.1.17 |
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | Control | RIB | XYL | MAN | MAL | LAC | SAC | GLYG | CAT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
47413 | - | - | + | + | - | + | + | - | + | - | - | - | + | - | + | + | + | + | - | - |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
122183 | - | + | + | + | - | + | + | + | - | + | + | + | - | + | - | + | + | + | - | + |
API 50CHac
@ref | Q | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
8433 | - | - | - | - | - | + | - | - | - | - | - | + | + | + | + | + | - | - | + | + | - | + | + | + | + | + | + | + | - | + | - | - | + | - | + | - | - | - | - | - | + | - | + | - | - | - | - | - | - | - |
8433 | - | - | - | - | - | + | - | - | - | - | + | + | + | + | + | + | - | - | + | + | - | + | + | + | + | + | + | + | +/- | + | - | - | + | - | + | - | - | - | - | - | + | - | + | - | - | - | - | - | - | - |
8433 | - | - | - | - | - | + | - | - | - | - | + | + | + | + | + | + | - | - | + | + | - | + | + | + | + | + | + | + | + | + | - | - | + | - | + | - | - | - | - | + | + | - | + | - | - | - | - | - | - | - |
8433 | - | - | - | - | - | + | - | - | - | - | + | + | + | + | + | + | - | - | + | + | - | + | + | + | + | + | + | + | + | + | - | + | + | - | + | - | - | - | - | - | + | - | + | - | - | - | - | +/- | - | - |
8433 | - | - | - | - | - | + | - | - | - | - | + | + | + | + | + | + | - | - | + | + | - | + | + | + | + | + | + | + | + | + | - | - | + | - | + | - | - | - | - | + | + | - | + | - | - | - | - | +/- | - | - |
API ID32E
@ref | ODC | ADH Arg | LDC Lys | URE | LARL | GAT | 5KG | LIP | RP | beta GLU | MAN | MAL | ADO | PLE | beta GUR | MNT | IND | beta NAG | beta GAL | GLU | SAC | LARA | DARL | alpha GLU | alpha GAL | TRE | RHA | INO | CEL | SOR | alphaMAL | AspA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
47413 | - | - | - | - | - | - | - | + | + | + | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - |
API rID32STR
@ref | ADH Arg | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | CDEX | VP | APPA | beta GAL | PyrA | beta NAG | GTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Mbeta DG | TAG | beta MAN | URE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
8433 | - | + | - | - | - | - | + | + | - | - | + | - | + | - | - | - | + | +/- | + | + | + | - | + | - | - | - | - | + | - | + | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
122183 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_113.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_88;97_93;98_102;99_113&stattab=map
- Last taxonomy: Lactobacillaceae
- 16S sequence: LC145553
- Sequence Identity:
- Total samples: 44444
- soil counts: 1801
- aquatic counts: 2397
- animal counts: 39363
- plant counts: 883
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
8433 | 2 | Risk group (German classification) |
122183 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Lactobacillus rhamnosus gene for 16S rRNA, partial sequence, strain: YIT 0105 (= ATCC 7469) | AB008211 | 1540 | ena | 47715 |
20218 | Lactobacillus rhamnosus gene for 16S ribosomal RNA, partial sequence, strain: ATCC 7469, clone: BF | AB759524 | 722 | ena | 47715 |
20218 | Lactobacillus rhamnosus ATCC 7469a 16S ribosomal RNA gene, partial sequence | AF429476 | 507 | ena | 47715 |
20218 | Lactobacillus rhamnosus ATCC 7469 16S ribosomal RNA gene, partial sequence | AF429485 | 507 | ena | 47715 |
20218 | Lactobacillus rhamnosus strain ATCC 7469a 16S ribosomal RNA gene, partial sequence; 16S-23S intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | AF429563 | 537 | ena | 47715 |
20218 | Lactobacillus rhamnosus strain ATCC 7469 16S ribosomal RNA gene, partial sequence; 16S-23S intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | AF429572 | 537 | ena | 47715 |
20218 | Lactobacillus rhamnosus strain ATCC 7469 16S ribosomal RNA gene, partial sequence | JQ580982 | 969 | ena | 47715 |
20218 | Lactobacillus rhamnosus 16S-23S rDNA intergenic spacer region | AF121201 | 218 | ena | 47715 |
20218 | Lactobacillus rhamnosus strain DSM 20021 16S ribosomal RNA gene, partial sequence | HQ012008 | 936 | ena | 47715 |
20218 | Lactobacillus casei 16S ribosomal RNA | M58815 | 1514 | ena | 1582 |
20218 | Lactobacillus rhamnosus genes for 16S rRNA, 16S-23S internal transcribed spacer, tRNA-Ile, tRNA-Ala, 23S rRNA, partial and complete sequence, strain:JCM 1136 | AB237512 | 578 | ena | 47715 |
20218 | Lactobacillus rhamnosus genes for 16S rRNA, 16S-23S internal transcribed spacer, 23S rRNA, partial sequence, strain:JCM 1136 | AB237513 | 365 | ena | 47715 |
20218 | Lactobacillus rhamnosus gene for 16S rRNA, partial sequence, strain: JCM 1136 | AB289276 | 616 | ena | 47715 |
20218 | Lactobacillus rhamnosus 16S ribosomal RNA, partial sequence; 16S/23S intergenic spacer region, complete sequence; and 23S ribosomal RNA partial sequence | AF182730 | 686 | ena | 47715 |
20218 | Lactobacillus rhamnosus gene for 16S rRNA | D16552 | 1521 | ena | 47715 |
20218 | Lactobacillus rhamnosus gene for 16S rRNA, partial sequence, strain: NBRC 3425 | AB626049 | 1495 | ena | 47715 |
67770 | Lactobacillus rhamnosus gene for 16S ribosomal RNA, partial sequence, strain: JCM 1136 | LC145553 | 1389 | ena | 47715 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Lacticaseibacillus rhamnosus DSM 20021 = JCM 1136 = NBRC 3425 | GCA_000615245 | contig | ncbi | 1423797 |
66792 | Lactobacillus rhamnosus DSM 20021 = JCM 1136 = NBRC 3425 | 1423797.7 | wgs | patric | 1423797 |
66792 | Lactobacillus rhamnosus DSM 20021 = JCM 1136 = NBRC 3425 | 1423797.16 | wgs | patric | 1423797 |
66792 | Lactobacillus rhamnosus JCM 1136 | 1236940.3 | wgs | patric | 1423797 |
66792 | Lacticaseibacillus rhamnosus DSM 20021 | 2690315983 | draft | img | 1423797 |
66792 | Lacticaseibacillus rhamnosus JCM 1136 | 2585427882 | draft | img | 1423797 |
67770 | Lacticaseibacillus rhamnosus DSM 20021 = JCM 1136 = NBRC 3425 | GCA_001435405 | scaffold | ncbi | 1423797 |
67770 | Lacticaseibacillus rhamnosus NRRL B-442 | GCA_002849515 | contig | ncbi | 47715 |
66792 | Lacticaseibacillus rhamnosus DSM 20021 = JCM 1136 = NBRC 3425 | GCA_007990855 | contig | ncbi | 1423797 |
GC content
@ref | GC-content | method |
---|---|---|
8433 | 47.0 | |
67770 | 46.7 | genome sequence analysis |
67770 | 47 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 92.314 | no |
gram-positive | yes | 93.988 | no |
anaerobic | no | 94.314 | no |
halophile | yes | 77.64 | no |
spore-forming | no | 90.745 | no |
glucose-util | yes | 90.616 | no |
thermophile | no | 97.859 | yes |
aerobic | no | 93.953 | no |
flagellated | no | 97.17 | no |
glucose-ferment | yes | 87.944 | no |
External links
@ref: 8433
culture collection no.: DSM 20021, ATCC 7469, CCM 1825, NCDO 243, NCIB 6375, WDCM 00101, CCUG 21452, NCTC 6375, JCM 1136, BCC 49729, BCRC 10940, CECT 278, CIP A157, IAM 1118, IFO 3425, KCTC 1046, LMG 6400, NBRC 3425, NCAIM B.01147, NCCB 46033, NCFB 243, NCIMB 6375, NCTC 12953, NRIC 1043, NRRL B-176, NRRL B-442, VKM B-574, IMET 10691, NCIMB 8010
straininfo link
- @ref: 75902
- straininfo: 3358
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Metabolism | 8896349 | Inducible transport of citrate in Lactobacillus rhamnosus ATCC 7469. | de Figueroa RM, Benito de Cardenas IL, Sesma F, Alvarez F, de Ruiz Holgado AP, Oliver G | J Appl Bacteriol | 10.1111/j.1365-2672.1996.tb03518.x | 1996 | Biological Transport, Citric Acid/*metabolism, Culture Media, Cyclic AMP/pharmacology, Energy Metabolism, *Gene Expression Regulation, Bacterial, Glucose/pharmacology, Lactobacillus/drug effects/growth & development/*metabolism | Cultivation |
Enzymology | 9227132 | Inhibition of purified enolases from oral bacteria by fluoride. | Guha-Chowdhury N, Clark AG, Sissons CH | Oral Microbiol Immunol | 10.1111/j.1399-302x.1997.tb00623.x | 1997 | Actinomyces/drug effects/enzymology, Bacterial Proteins/*antagonists & inhibitors/metabolism, Cariostatic Agents/*pharmacology, Dose-Response Relationship, Drug, Enzyme Inhibitors/pharmacology, Fluorides/*pharmacology, Glycolysis/physiology, Hydrogen-Ion Concentration, Kinetics, Lactobacillus/drug effects/enzymology, Least-Squares Analysis, Mouth/microbiology, Phosphates/pharmacology, Phosphopyruvate Hydratase/*antagonists & inhibitors/metabolism, Streptococcus/*drug effects/*enzymology | Pathogenicity |
Pathogenicity | 9237125 | Lactobacillus rhamnosus GG (ATCC 53103) and platelet aggregation in vitro. | Korpela R, Moilanen E, Saxelin M, Vapaatalo H | Int J Food Microbiol | 10.1016/s0168-1605(97)00049-4 | 1997 | Adult, Humans, Lactobacillus/*pathogenicity, Middle Aged, *Platelet Aggregation | |
Metabolism | 10225909 | Insertional inactivation of genes responsible for the D-alanylation of lipoteichoic acid in Streptococcus gordonii DL1 (Challis) affects intrageneric coaggregations. | Clemans DL, Kolenbrander PE, Debabov DV, Zhang Q, Lunsford RD, Sakone H, Whittaker CJ, Heaton MP, Neuhaus FC | Infect Immun | 10.1128/IAI.67.5.2464-2474.1999 | 1999 | Adhesins, Bacterial/genetics/metabolism, Amino Acid Sequence, Bacterial Adhesion/*genetics/*physiology, Base Sequence, Cloning, Molecular, DNA Primers/genetics, DNA Transposable Elements/genetics, DNA, Bacterial/genetics, *Genes, Bacterial, Humans, Microscopy, Electron, Microscopy, Electron, Scanning, Molecular Sequence Data, Mouth/microbiology, Mutagenesis, Insertional, Sequence Homology, Amino Acid, Streptococcus/*genetics/*metabolism/ultrastructure, Teichoic Acids/*biosynthesis | Enzymology |
Phylogeny | 10473394 | Comparison of ribotyping, randomly amplified polymorphic DNA analysis, and pulsed-field gel electrophoresis in typing of Lactobacillus rhamnosus and L. casei strains. | Tynkkynen S, Satokari R, Saarela M, Mattila-Sandholm T, Saxelin M | Appl Environ Microbiol | 10.1128/AEM.65.9.3908-3914.1999 | 1999 | *Bacterial Typing Techniques, DNA Primers, Deoxyribonuclease EcoRI/metabolism, Electrophoresis, Gel, Pulsed-Field, Genes, rRNA, Genotype, Lactobacillus/*classification/*genetics, Lactobacillus casei/classification/genetics, Polymerase Chain Reaction/methods, Random Amplified Polymorphic DNA Technique, Species Specificity | Enzymology |
Metabolism | 11297355 | Influence of temperature on flavour compound production from citrate by Lactobacillus rhamnosus ATCC 7469. | De Figueroa RM, Oliver G, Benito de Cardenas IL | Microbiol Res | 10.1016/s0944-5013(01)80002-1 | 2001 | Acetoin/metabolism, Citric Acid/*metabolism, Diacetyl/metabolism, Flavoring Agents/*metabolism, Hydrogen-Ion Concentration, Lactobacillus/genetics/*metabolism, Temperature, Time Factors | Biotechnology |
Phylogeny | 11316369 | Identification of salivary Lactobacillus rhamnosus species by DNA profiling and a specific probe. | Richard B, Groisillier A, Badet C, Dorignac G, Lonvaud-Funel A | Res Microbiol | 10.1016/s0923-2508(01)01187-1 | 2001 | *Bacterial Typing Techniques, *DNA Fingerprinting, *DNA Probes/isolation & purification, DNA, Bacterial/genetics, Genome, Bacterial, Humans, Lactobacillus casei/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, Polymerase Chain Reaction, Random Amplified Polymorphic DNA Technique, Saliva/*microbiology | Enzymology |
Pathogenicity | 11682174 | Phosphatidylinositol-specific phospholipase C activity in Lactobacillus rhamnosus with capacity to translocate. | Rodriguez AV, Baigori MD, Alvarez S, Castro GR, Oliver G | FEMS Microbiol Lett | 10.1111/j.1574-6968.2001.tb10858.x | 2001 | Animals, *Bacterial Translocation, Humans, Lactobacillus/*enzymology/genetics/isolation & purification/*physiology, Liver/microbiology, Mice, Mice, Inbred BALB C, Phosphatidylinositol Diacylglycerol-Lyase, Phosphoinositide Phospholipase C, *Probiotics, Random Amplified Polymorphic DNA Technique, Spleen/microbiology, Type C Phospholipases/*metabolism | Enzymology |
Phylogeny | 14607400 | Construction and use of a computerized DNA fingerprint database for lactic acid bacteria from silage. | Chan RK, Wortman CR, Smiley BK, Hendrick CA | J Microbiol Methods | 10.1016/s0167-7012(03)00186-6 | 2003 | DNA Fingerprinting/*methods, DNA, Bacterial/chemistry/genetics/metabolism, *Databases, Nucleic Acid, Deoxyribonuclease EcoRI/metabolism, Electrophoresis, Agar Gel, Image Processing, Computer-Assisted, Lactobacillus/*classification/genetics, Phylogeny, Ribotyping, Silage/*microbiology | Metabolism |
Metabolism | 15383715 | Glycerol metabolism of Lactobacillus rhamnosus ATCC 7469: cloning and expression of two glycerol kinase genes. | Alvarez Mde F, Medina R, Pasteris SE, Strasser de Saad AM, Sesma F | J Mol Microbiol Biotechnol | 10.1159/000079826 | 2004 | Acetates/metabolism, Adaptation, Physiological, Aerobiosis, Amino Acid Sequence, Bacterial Proteins/genetics/metabolism, Base Sequence, Cloning, Molecular, Conserved Sequence, DNA, Bacterial/chemistry/isolation & purification, Diacetyl/metabolism, Gene Expression Regulation, Bacterial, Genes, Bacterial, Glucose/analysis/metabolism, Glycerol/*metabolism, Glycerol Kinase/*genetics/*metabolism, Glycerolphosphate Dehydrogenase/genetics, Lactic Acid/metabolism, Lactobacillus/*enzymology/genetics/growth & development/metabolism, Molecular Sequence Data, Operon, Promoter Regions, Genetic, RNA, Bacterial/analysis, RNA, Messenger/analysis, Sequence Alignment, Sequence Analysis, DNA | Enzymology |
Metabolism | 15541791 | Immune responses in rainbow trout Oncorhynchus mykiss induced by a potential probiotic bacteria Lactobacillus rhamnosus JCM 1136. | Panigrahi A, Kiron V, Kobayashi T, Puangkaew J, Satoh S, Sugita H | Vet Immunol Immunopathol | 10.1016/j.vetimm.2004.08.006 | 2004 | Animal Nutritional Physiological Phenomena, Animals, Complement Activation/immunology, Immunoglobulins/blood, Intestines/microbiology, *Lactobacillus, Leukocytes/immunology, Muramidase/blood, Oncorhynchus mykiss/*immunology, Phagocytosis/immunology, Probiotics/*pharmacology, Stomach/microbiology, Superoxides/metabolism, Water Microbiology | |
Phylogeny | 15727832 | Bile salt and acid tolerance of Lactobacillus rhamnosus strains isolated from Parmigiano Reggiano cheese. | Succi M, Tremonte P, Reale A, Sorrentino E, Grazia L, Pacifico S, Coppola R | FEMS Microbiol Lett | 10.1016/j.femsle.2005.01.037 | 2005 | Base Sequence, Bile Acids and Salts/*pharmacology, Cheese/*microbiology, DNA, Bacterial/genetics, *Food Microbiology, Hydrogen-Ion Concentration, Lactobacillus/*drug effects/genetics/*isolation & purification, Phenotype, *Probiotics, Random Amplified Polymorphic DNA Technique | Biotechnology |
Metabolism | 16213050 | Effects of yeasts and bacteria on the levels of folates in rye sourdoughs. | Kariluoto S, Aittamaa M, Korhola M, Salovaara H, Vahteristo L, Piironen V | Int J Food Microbiol | 10.1016/j.ijfoodmicro.2005.06.013 | 2005 | Bread/microbiology, Coculture Techniques, Colony Count, Microbial, *Fermentation, Folic Acid/analysis/biosynthesis/*metabolism, Food Handling/methods, Food Microbiology, Lactobacillus/*metabolism, Secale/*microbiology, Yeasts/*metabolism | Biotechnology |
Stress | 17147441 | Effect of germination and thermal treatments on folates in rye. | Kariluoto S, Liukkonen KH, Myllymaki O, Vahteristo L, Kaukovirta-Norja A, Piironen V | J Agric Food Chem | 10.1021/jf061734j | 2006 | Folic Acid/*analysis, Germination/*physiology, *Hot Temperature, Plant Roots/chemistry, Secale/*chemistry, Seeds/*chemistry | |
Pathogenicity | 21059159 | Protective effect of Lactobacillus casei strain Shirota against lethal infection with multi-drug resistant Salmonella enterica serovar Typhimurium DT104 in mice. | Asahara T, Shimizu K, Takada T, Kado S, Yuki N, Morotomi M, Tanaka R, Nomoto K | J Appl Microbiol | 10.1111/j.1365-2672.2010.04884.x | 2010 | Acetic Acid/pharmacology, Animals, Disease Models, Animal, Drug Resistance, Multiple, Bacterial, Lactobacillus, *Lactobacillus casei, Male, Mice, Mice, Inbred BALB C, Probiotics/pharmacology/*therapeutic use, Salmonella Infections, Animal/pathology/*prevention & control, *Salmonella typhimurium/drug effects/growth & development | |
Phylogeny | 22021580 | Lactobacillus brantae sp. nov., isolated from faeces of Canada geese (Branta canadensis). | Volokhov DV, Amselle M, Beck BJ, Popham DL, Whittaker P, Wang H, Kerrigan E, Chizhikov VE | Int J Syst Evol Microbiol | 10.1099/ijs.0.033852-0 | 2011 | Animals, Bacterial Typing Techniques, Base Composition, Carbohydrates/analysis, DNA, Bacterial/genetics, DNA, Ribosomal Spacer/genetics, Fatty Acids/analysis, Feces/microbiology, Geese/*microbiology, Genes, Bacterial, Genotype, Lactobacillus/*classification/genetics/isolation & purification, Molecular Sequence Data, Phenotype, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity | Genetics |
Metabolism | 23107725 | Effect of different fermentation parameters on L-lactic acid production from liquid distillery stillage. | Djukic-Vukovic AP, Mojovic LV, Vukasinovic-Sekulic MS, Rakin MB, Nikolic SB, Pejin JD, Bulatovic ML | Food Chem | 10.1016/j.foodchem.2012.03.011 | 2012 | Animal Feed/*analysis/microbiology, Biomass, Culture Media/chemistry/metabolism, Fermentation, Hydrogen-Ion Concentration, Industrial Microbiology/*methods, Lactic Acid/*metabolism, Lactobacillus rhamnosus/*metabolism, Temperature, Waste Disposal, Fluid/*methods | Biotechnology |
Biotechnology | 23114502 | Integrated production of lactic acid and biomass on distillery stillage. | Djukic-Vukovic AP, Mojovic LV, Vukasinovic-Sekulic MS, Nikolic SB, Pejin JD | Bioprocess Biosyst Eng | 10.1007/s00449-012-0842-x | 2012 | *Biomass, Lactic Acid/*biosynthesis, Lactobacillus rhamnosus/*growth & development, Time Factors | |
Metabolism | 23186681 | Lactic acid production on liquid distillery stillage by Lactobacillus rhamnosus immobilized onto zeolite. | Djukic-Vukovic AP, Mojovic LV, Jokic BM, Nikolic SB, Pejin JD | Bioresour Technol | 10.1016/j.biortech.2012.10.066 | 2012 | Batch Cell Culture Techniques, Carbohydrate Metabolism, Cells, Immobilized/cytology/metabolism, Colony Count, Microbial, *Distillation, Fermentation, Industrial Waste/*analysis, Lactic Acid/*biosynthesis, Lactobacillus rhamnosus/*cytology/*metabolism, Microbial Viability, Zeolites/*chemistry | Biotechnology |
Metabolism | 23332852 | Antimicrobial potential for the combination of bovine lactoferrin or its hydrolysate with lactoferrin-resistant probiotics against foodborne pathogens. | Chen PW, Jheng TT, Shyu CL, Mao FC | J Dairy Sci | 10.3168/jds.2012-6112 | 2013 | Animals, Anti-Infective Agents/administration & dosage/*therapeutic use, Bifidobacterium/metabolism, Cattle, Enterococcus faecalis/drug effects, Escherichia coli/drug effects, Lactobacillus/metabolism, Lactobacillus acidophilus/metabolism, Lactobacillus rhamnosus/metabolism, Lactoferrin/administration & dosage/drug effects/*therapeutic use, Pediococcus/metabolism, Probiotics/administration & dosage/*therapeutic use, Protein Hydrolysates, Salmonella typhimurium/drug effects | Pathogenicity |
Biotechnology | 24389928 | Dose-dependent effects of Lactobacillus rhamnosus on serum interleukin-17 production and intestinal T-cell responses in pigs challenged with Escherichia coli. | Zhu YH, Li XQ, Zhang W, Zhou D, Liu HY, Wang JF | Appl Environ Microbiol | 10.1128/AEM.03668-13 | 2014 | Animals, Blood/immunology, Enterotoxigenic Escherichia coli/*immunology, Immunologic Factors/*administration & dosage, Interleukin-17/*blood, Intestinal Mucosa/*immunology, Lactobacillus rhamnosus/*immunology, Probiotics/*administration & dosage, Swine, T-Lymphocyte Subsets/*immunology | |
Metabolism | 24438190 | Shelf life stability of lactobacilli encapsulated in raspberry powder: insights into non-dairy probiotics. | Anekella K, Orsat V | Int J Food Sci Nutr | 10.3109/09637486.2013.869793 | 2014 | Anti-Bacterial Agents/pharmacology, Beverages/analysis/*microbiology, Bile Acids and Salts/metabolism, Colony Count, Microbial, Disk Diffusion Antimicrobial Tests, Drug Resistance, Multiple, Bacterial, Food Additives/chemistry, Food Storage, Food Technology, Food, Preserved/analysis/*microbiology, Fruit/*chemistry, Hydrogen-Ion Concentration, Lactobacillus acidophilus/drug effects/*growth & development/isolation & purification/metabolism, Lactobacillus rhamnosus/drug effects/*growth & development/isolation & purification/metabolism, Microbial Viability, Particle Size, Polysaccharides/chemistry, Probiotics/*chemistry, Refrigeration, Rubus/*chemistry | Enzymology |
Pathogenicity | 25269603 | The potential hazards of Aspergillus sp. in foods and feeds, and the role of biological treatment: a review. | Sheikh-Ali SI, Ahmad A, Mohd-Setapar SH, Zakaria ZA, Abdul-Talib N, Khamis AK, Hoque ME | J Microbiol | 10.1007/s12275-014-4294-7 | 2014 | Animals, Aspergillus flavus/*growth & development/metabolism, Food Contamination/*prevention & control, *Food Microbiology, Food Safety, Humans, Lactobacillus rhamnosus/growth & development/*physiology, *Microbial Interactions, Mycotoxins/metabolism, Pest Control, Biological/*methods, Saccharomyces cerevisiae/growth & development/*physiology | Metabolism |
Metabolism | 25915861 | A Selected Lactobacillus rhamnosus Strain Promotes EGFR-Independent Akt Activation in an Enterotoxigenic Escherichia coli K88-Infected IPEC-J2 Cell Model. | Zhang W, Zhu YH, Yang JC, Yang GY, Zhou D, Wang JF | PLoS One | 10.1371/journal.pone.0125717 | 2015 | Animals, Apoptosis/physiology, Bacterial Adhesion/physiology, Blotting, Western, Cell Line, Enterotoxigenic Escherichia coli/*metabolism, Epidermal Growth Factor/*physiology, Escherichia coli Infections/*metabolism/physiopathology, Intestinal Mucosa/metabolism/microbiology/*physiopathology, Lactobacillus rhamnosus/*metabolism, Mucins/metabolism, Nod2 Signaling Adaptor Protein/physiology, Oncogene Protein v-akt/*physiology, Real-Time Polymerase Chain Reaction, Swine, Toll-Like Receptor 4/physiology, Tumor Necrosis Factor-alpha/physiology | Pathogenicity |
Biotechnology | 26639411 | Wastes from bioethanol and beer productions as substrates for l(+) lactic acid production - A comparative study. | Djukic-Vukovic A, Mladenovic D, Radosavljevic M, Kocic-Tanackov S, Pejin J, Mojovic L | Waste Manag | 10.1016/j.wasman.2015.11.031 | 2015 | Beer, *Biofuels, Biomass, Bread, Carbohydrates/chemistry, Edible Grain/*chemistry, Fermentation, Food Industry/*methods, Garbage, Hydrogen-Ion Concentration, Industrial Waste, Lactic Acid/*chemistry, Lactobacillus rhamnosus, Nitrogen/chemistry, *Refuse Disposal, Solanum tuberosum, Temperature, Waste Water | |
Metabolism | 26649329 | Live and Heat-Killed Lactobacillus rhamnosus ATCC 7469 May Induce Modulatory Cytokines Profiles on Macrophages RAW 264.7. | Jorjao AL, de Oliveira FE, Leao MV, Carvalho CA, Jorge AO, de Oliveira LD | ScientificWorldJournal | 10.1155/2015/716749 | 2015 | Animals, Cell Line, Cytokines/*metabolism, Lactobacillus rhamnosus/*pathogenicity, Macrophages/drug effects/metabolism/*microbiology, Mice, Probiotics/*pharmacology | Pathogenicity |
Enzymology | 27606962 | Lactobacillus is able to alter the virulence and the sensitivity profile of Candida albicans. | Oliveira VM, Santos SS, Silva CR, Jorge AO, Leao MV | J Appl Microbiol | 10.1111/jam.13289 | 2016 | Antifungal Agents/pharmacology, Biofilms/growth & development, Candida albicans/*drug effects/isolation & purification/*pathogenicity/physiology, Lactobacillus rhamnosus/*physiology, Microbial Interactions, Virulence Factors/metabolism | Phylogeny |
Pathogenicity | 27982224 | Dentifrice Containing Extract of Rosmarinus officinalis Linn.: An Antimicrobial Evaluation. | Valones MA, Higino JS, Souza PR, Crovella S, Caldas AF Junior, Carvalho AA | Braz Dent J | 10.1590/0103-6440201600672 | 2016 | Anti-Infective Agents/*pharmacology, *Dentifrices, Humans, Microbial Sensitivity Tests, Plant Extracts/*pharmacology, Rosmarinus/*chemistry | |
Pathogenicity | 28554134 | Lactobacillus rhamnosus ATCC 7469 exopolysaccharides synergizes with low level ionizing radiation to modulate signaling molecular targets in colorectal carcinogenesis in rats. | Zahran WE, Elsonbaty SM, Moawed FSM | Biomed Pharmacother | 10.1016/j.biopha.2017.05.089 | 2017 | Animals, Carcinogenesis/*drug effects/*radiation effects, Colorectal Neoplasms/metabolism/pathology/*therapy, Combined Modality Therapy/methods, *Lactobacillus rhamnosus, Male, Polysaccharides, Bacterial/pharmacology/*therapeutic use, *Radiation, Ionizing, Rats, Signal Transduction/drug effects/radiation effects | Metabolism |
Cultivation | 28659890 | Pre-cultivation with Selected Prebiotics Enhances the Survival and the Stress Response of Lactobacillus rhamnosus Strains in Simulated Gastrointestinal Transit. | Succi M, Tremonte P, Pannella G, Tipaldi L, Cozzolino A, Romaniello R, Sorrentino E, Coppola R | Front Microbiol | 10.3389/fmicb.2017.01067 | 2017 | Stress | |
Metabolism | 29177947 | Effect of Lactobacillus rhamnosus on the response of Galleria mellonella against Staphylococcus aureus and Escherichia coli infections. | Jorjao AL, de Oliveira FE, Leao MVP, Jorge AOC, de Oliveira LD | Arch Microbiol | 10.1007/s00203-017-1441-7 | 2017 | Animals, Escherichia coli/*immunology/physiology, Hemolymph/metabolism, Host-Pathogen Interactions, Lactobacillus rhamnosus/*immunology, Larva/immunology/microbiology, Moths/*immunology/microbiology, Probiotics, Staphylococcus aureus/*immunology/physiology | Pathogenicity |
Pathogenicity | 29243027 | Lactobacillus rhamnosus reduces parasite load on Toxocara canis experimental infection in mice, but has no effect on the parasite in vitro. | Walcher DL, Cruz LAX, de Lima Telmo P, Martins LHR, da Costa de Avila LF, Berne MEA, Scaini CJ | Parasitol Res | 10.1007/s00436-017-5712-7 | 2017 | Animals, Humans, Lactobacillus rhamnosus/*physiology, Larva/drug effects, Mice, Mice, Inbred BALB C, Parasite Load, Probiotics/*administration & dosage, Toxocara canis/*drug effects/microbiology/physiology, Toxocariasis/*drug therapy/parasitology, Zoonoses/drug therapy/parasitology | |
Metabolism | 29330879 | Biotechnological conversion of spent coffee grounds into lactic acid. | Hudeckova H, Neureiter M, Obruca S, Fruhauf S, Marova I | Lett Appl Microbiol | 10.1111/lam.12849 | 2018 | Bacillus coagulans/enzymology/metabolism, Bioreactors/*microbiology, Biotechnology, Cellulase/*metabolism, Coffee/chemistry/*metabolism, Fermentation, Hydrolysis, Lactic Acid/*biosynthesis, Lactobacillus rhamnosus/enzymology/metabolism, Refuse Disposal/*methods, Solid Waste | Enzymology |
Genetics | 29449386 | Draft Genome Sequence of Lactobacillus rhamnosus NRRL B-442, a Potential Probiotic Strain. | Muyyarikkandy MS, Alqahtani FH, Mandoiu I, Amalaradjou MA | Genome Announc | 10.1128/genomeA.00046-18 | 2018 | ||
Pathogenicity | 29550602 | Effects of dietary Lactobacillus rhamnosus JCM1136 and Lactococcus lactis subsp. lactis JCM5805 on the growth, intestinal microbiota, morphology, immune response and disease resistance of juvenile Nile tilapia, Oreochromis niloticus. | Xia Y, Lu M, Chen G, Cao J, Gao F, Wang M, Liu Z, Zhang D, Zhu H, Yi M | Fish Shellfish Immunol | 10.1016/j.fsi.2018.03.020 | 2018 | Animal Feed/analysis, Animals, Cichlids/anatomy & histology/growth & development/*immunology/microbiology, Diet/veterinary, Gastrointestinal Microbiome/*drug effects, Intestines/drug effects/microbiology, Lactobacillus rhamnosus/*chemistry, Lactococcus lactis/*chemistry, Probiotics/*pharmacology, Random Allocation | |
Metabolism | 29633638 | Lipoteichoic acids are embedded in cell walls during logarithmic phase, but exposed on membrane vesicles in Lactobacillus gasseri JCM 1131(T). | Shiraishi T, Yokota S, Sato Y, Ito T, Fukiya S, Yamamoto S, Sato T, Yokota A | Benef Microbes | 10.3920/BM2017.0124 | 2018 | Antibodies, Monoclonal/metabolism, Antigens, Surface/*metabolism, Cell Membrane/chemistry/*metabolism/ultrastructure, Cell Wall/chemistry/*metabolism, Lactobacillus fermentum, Lactobacillus gasseri/chemistry/growth & development/*physiology/ultrastructure, Lactobacillus rhamnosus, Lipopolysaccharides/*metabolism, Probiotics, Protein Binding, Teichoic Acids/*metabolism | |
29881432 | Promoting Probiotics Survival by Microencapsualtion with Hylon Starch and Genipin Cross-linked Coatings in Simulated Gastro-intestinal Condition and Heat Treatment. | Khosravi Zanjani MA, Ehsani MR, Ghiassi Tarzi B, Sharifan A | Iran J Pharm Res | 2018 | ||||
Metabolism | 30778645 | Utilization of brewing and malting by-products as carrier and raw materials in l-(+)-lactic acid production and feed application. | Radosavljevic M, Pejin J, Pribic M, Kocic-Tanackov S, Romanic R, Mladenovic D, Djukic-Vukovic A, Mojovic L | Appl Microbiol Biotechnol | 10.1007/s00253-019-09683-5 | 2019 | Animal Feed/*analysis, Cells, Immobilized, Edible Grain/metabolism, *Fermentation, Hydrolysis, Lactic Acid/*biosynthesis, Lactobacillus rhamnosus/metabolism, Lecithins/metabolism, Microbial Viability, *Probiotics, Protein Hydrolysates, Saccharomyces cerevisiae/metabolism | Biotechnology |
30820202 | Lactobacillus rhamnosus biosurfactant inhibits biofilm formation and gene expression of caries-inducing Streptococcus mutans. | Tahmourespour A, Kasra-Kermanshahi R, Salehi R | Dent Res J (Isfahan) | 2019 | ||||
30949947 | Non-thermal plasma and ultrasound-assisted open lactic acid fermentation of distillery stillage. | Djukic-Vukovic A, Lazovic S, Mladenovic D, Knezevic-Jugovic Z, Pejin J, Mojovic L | Environ Sci Pollut Res Int | 10.1007/s11356-019-04894-9 | 2019 | Fermentation, Lactic Acid, Lactobacillus rhamnosus, Ultrasonics, Waste Disposal, Fluid/*methods | ||
Metabolism | 31605205 | Immobilization of Lactobacillus rhamnosus in polyvinyl alcohol/calcium alginate matrix for production of lactic acid. | Radosavljevic M, Levic S, Belovic M, Pejin J, Djukic-Vukovic A, Mojovic L, Nedovic V | Bioprocess Biosyst Eng | 10.1007/s00449-019-02228-0 | 2019 | Alginates/*chemistry, Cells, Immobilized/*metabolism, Lactic Acid/*biosynthesis, Lactobacillus rhamnosus/*metabolism, Polyvinyl Alcohol/*chemistry | Biotechnology |
Metabolism | 31902869 | Growth Response of Lactobacillus rhamnosus Chloramphenicol-Resistant Strain ATCC 27773 to Pteroyl-Mono- and -Di-Glutamates. | Koseki K, Okamoto N, Bito T, Ebara S, Yabuta Y, Watanabe F | J Nutr Sci Vitaminol (Tokyo) | 10.3177/jnsv.65.545 | 2019 | Animals, Chickens, Chloramphenicol/pharmacology, Drug Resistance, Bacterial, Folic Acid/*analysis, *Food Analysis/methods/standards, *Lactobacillus rhamnosus/drug effects/physiology, *Pteroylpolyglutamic Acids/metabolism/pharmacology, gamma-Glutamyl Hydrolase/metabolism | Pathogenicity |
Pathogenicity | 32114169 | Rheological properties of a neutral polysaccharide extracted from maca (Lepidium meyenii Walp.) roots with prebiotic and anti-inflammatory activities. | Lee YK, Jung SK, Chang YH | Int J Biol Macromol | 10.1016/j.ijbiomac.2020.02.307 | 2020 | Animals, Anti-Inflammatory Agents/*chemistry, Cell Line, Hydrogen Bonding, Lepidium/*chemistry, Mice, Molecular Weight, Plant Extracts/*chemistry, Plant Roots/*chemistry, Polysaccharides/*chemistry, Prebiotics, RAW 264.7 Cells, Rheology/methods, Viscosity/drug effects | |
Pathogenicity | 32246325 | Effects of Lactobacillus rhamnosus ATCC 7469 on Different Parameters Related to Health Status of Rainbow Trout (Oncorhynchus mykiss) and the Protection Against Yersinia ruckeri. | Hooshyar Y, Abedian Kenari A, Paknejad H, Gandomi H | Probiotics Antimicrob Proteins | 10.1007/s12602-020-09645-8 | 2020 | Alginates/chemistry, Animal Feed/analysis, Animals, Body Composition/drug effects, Catalase/genetics/immunology, Cell Encapsulation/methods, Cells, Immobilized, Chitosan/chemistry, Cholesterol/blood, Complement Pathway, Alternative/drug effects, Diet, Disease Resistance/drug effects/genetics/immunology, Fish Diseases/immunology/microbiology/*therapy, Fish Proteins/*genetics/immunology, Gene Expression Regulation/*drug effects/immunology, Interleukin-1/genetics/immunology, Lactobacillus rhamnosus/*physiology, Muramidase/genetics/immunology, Oncorhynchus mykiss/growth & development/*immunology/microbiology, Probiotics/*pharmacology, Superoxide Dismutase/genetics/immunology, Tumor Necrosis Factor-alpha/genetics/immunology, Weight Gain/drug effects, Yersinia Infections/immunology/microbiology/*therapy, Yersinia ruckeri/drug effects/growth & development/pathogenicity | |
34058894 | Microencapsulation of Lactobacillus rhamnosus ATCC 7469 by spray drying using maltodextrin, whey protein concentrate and trehalose. | Agudelo-Chaparro J, Ciro-Velasquez HJ, Sepulveda-Valencia JU, Perez-Monterroza EJ | Food Sci Technol Int | 10.1177/10820132211020621 | 2021 | |||
34738887 | Cell-free supernatants produced by lactic acid bacteria reduce Salmonella population in vitro. | Evangelista AG, Correa JAF, Dos Santos JVG, Matte EHC, Milek MM, Biauki GC, Costa LB, Luciano FB | Microbiology (Reading) | 10.1099/mic.0.001102 | 2021 | Animals, *Lactobacillales, Lactobacillus, *Probiotics/pharmacology, Salmonella, *Salmonella Infections, Animal/microbiology, Swine | ||
Pathogenicity | 34975786 | A Rapid Screening Method of Candidate Probiotics for Inflammatory Bowel Diseases and the Anti-inflammatory Effect of the Selected Strain Bacillus smithii XY1. | Huang X, Ai F, Ji C, Tu P, Gao Y, Wu Y, Yan F, Yu T | Front Microbiol | 10.3389/fmicb.2021.760385 | 2021 | ||
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Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
8433 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20021) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-20021 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
41838 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/10119 | ||||
47413 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 21452) | https://www.ccug.se/strain?id=21452 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68371 | Automatically annotated from API 50CH acid | |||||
68374 | Automatically annotated from API ID32E | |||||
68379 | Automatically annotated from API Coryne | |||||
68381 | Automatically annotated from API rID32STR | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
75902 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID3358.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
122183 | Curators of the CIP | Collection of Institut Pasteur (CIP A157) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20A157 |