Strain identifier

BacDive ID: 6401

Type strain: No

Species: Lactobacillus acetotolerans

Strain Designation: S-34

Strain history: IFO 13121 <-- RIB 9134.

NCBI tax ID(s): 1600 (species)

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General

@ref: 8755

BacDive-ID: 6401

DSM-Number: 20351

keywords: 16S sequence, Bacteria, mesophilic

description: Lactobacillus acetotolerans S-34 is a mesophilic bacterium that was isolated from spoilt sake.

NCBI tax id

  • NCBI tax id: 1600
  • Matching level: species

strain history

@refhistory
8755<- K. Nosiro, S-34
67770IFO 13121 <-- RIB 9134.

doi: 10.13145/bacdive6401.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Lactobacillus
  • species: Lactobacillus acetotolerans
  • full scientific name: Lactobacillus acetotolerans Entani et al. 1986

@ref: 8755

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lactobacillus

species: Lactobacillus acetotolerans

full scientific name: Lactobacillus acetotolerans Entani et al. 1986

strain designation: S-34

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8755LACTOBACILLUS MEDIUM II (DSMZ Medium 93)yeshttps://mediadive.dsmz.de/medium/93Name: LACTOBACILLUS MEDIUM II (DSMZ Medium 93) Composition: Na-acetate 20.0 g/l Glucose 20.0 g/l Agar 15.0 g/l Casein peptone 10.0 g/l Yeast extract 5.0 g/l Meat extract 2.0 g/l K2HPO4 0.5 g/l KH2PO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l DL-mevalonic acid 0.03 g/l FeSO4 x 7 H2O 0.01 g/l MnSO4 x H2O 0.0075 g/l Tween 80 Ethanol Distilled water
8755PEDIOCOCCUS DAMNOSUS MEDIUM (DSMZ Medium 231)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium231.pdf

culture temp

@refgrowthtypetemperaturerange
8755positivegrowth30mesophilic
8755positivegrowth26mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

murein

  • @ref: 8755
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
8755-+/----+/------+++----+---+---------+----------------+/-

Isolation, sampling and environmental information

isolation

  • @ref: 8755
  • sample type: spoilt sake

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Fermented
#Environmental#Microbial community
#Engineered#Food production#Beverage

taxonmaps

  • @ref: 69479
  • File name: preview.99_7067.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_46;96_3312;97_4062;98_5193;99_7067&stattab=map
  • Last taxonomy: Lactobacillus acetotolerans subclade
  • 16S sequence: AB680371
  • Sequence Identity:
  • Total samples: 9628
  • soil counts: 1475
  • aquatic counts: 1136
  • animal counts: 6619
  • plant counts: 398

Safety information

risk assessment

  • @ref: 8755
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Lactobacillus sp. JCM 7524 gene for 16S rRNA, partial sequence, strain: JCM 7524AB289160631ena418201
20218Lactobacillus homohiochii gene for 16S rRNA, partial sequence, strain: NBRC 13121AB6803711495ena33961

GC content

  • @ref: 8755
  • GC-content: 36.3

External links

@ref: 8755

culture collection no.: DSM 20351, ATCC 27745, IFO 13121, JCM 7524, NBRC 13121, CECT 983, LMG 11452, LMG 11721, NCFB 2402

straininfo link

  • @ref: 75874
  • straininfo: 100382

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8755Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20351)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20351
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
75874Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID100382.1StrainInfo: A central database for resolving microbial strain identifiers