Strain identifier

BacDive ID: 6400

Type strain: No

Species: Lactobacillus sp.

Strain Designation: S-24

Strain history: <- K. Nosiro, S-24

NCBI tax ID(s): 1591 (species)

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General

@ref: 8616

BacDive-ID: 6400

DSM-Number: 20354

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Lactobacillus sp. S-24 is a mesophilic bacterium that was isolated from spoilt sake.

NCBI tax id

  • NCBI tax id: 1591
  • Matching level: species

strain history

  • @ref: 8616
  • history: <- K. Nosiro, S-24

doi: 10.13145/bacdive6400.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Lactobacillus
  • species: Lactobacillus sp.
  • full scientific name: Lactobacillus Beijerinck 1901 (Approved Lists 1980)

@ref: 8616

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lactobacillus

species: Lactobacillus sp.

full scientific name: Lactobacillus sp.

strain designation: S-24

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no98.199
69480100positive

Culture and growth conditions

culture medium

  • @ref: 8616
  • name: LACTOBACILLUS MEDIUM II (DSMZ Medium 93)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/93
  • composition: Name: LACTOBACILLUS MEDIUM II (DSMZ Medium 93) Composition: Na-acetate 20.0 g/l Glucose 20.0 g/l Agar 15.0 g/l Casein peptone 10.0 g/l Yeast extract 5.0 g/l Meat extract 2.0 g/l K2HPO4 0.5 g/l KH2PO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l DL-mevalonic acid 0.03 g/l FeSO4 x 7 H2O 0.01 g/l MnSO4 x H2O 0.0075 g/l Tween 80 Ethanol Distilled water

culture temp

  • @ref: 8616
  • growth: positive
  • type: growth
  • temperature: 26
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no100

murein

  • @ref: 8616
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

Isolation, sampling and environmental information

isolation

  • @ref: 8616
  • sample type: spoilt sake

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Fermented
#Environmental#Microbial community
#Engineered#Food production#Beverage

taxonmaps

  • @ref: 69479
  • File name: preview.99_7067.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_46;96_3312;97_4062;98_5193;99_7067&stattab=map
  • Last taxonomy: Lactobacillus acetotolerans subclade
  • 16S sequence: AB680370
  • Sequence Identity:
  • Total samples: 9628
  • soil counts: 1475
  • aquatic counts: 1136
  • animal counts: 6619
  • plant counts: 398

Sequence information

16S sequences

  • @ref: 20218
  • description: Lactobacillus homohiochii gene for 16S rRNA, partial sequence, strain: NBRC 13120
  • accession: AB680370
  • length: 1495
  • database: ena
  • NCBI tax ID: 33961

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lactobacillus acetotolerans NBRC 13120GCA_001042405completencbi1600
66792Lactobacillus acetotolerans strain NBRC 131201600.4completepatric1600
66792Lactobacillus acetotolerans NBRC 131202651869842completeimg1600

GC content

  • @ref: 8616
  • GC-content: 34.6

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno95.924no
flagellatedno98.937no
gram-positiveyes96.756no
anaerobicyes77.283no
aerobicno97.68no
halophileyes78.809no
spore-formingno97.843no
glucose-utilyes93.327no
thermophileno98.082no
glucose-fermentyes90.624no

External links

@ref: 8616

culture collection no.: DSM 20354, ATCC 27744, IFO 13120, NBRC 13120

straininfo link

  • @ref: 75873
  • straininfo: 39152

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8616Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20354)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20354
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
75873Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID39152.1StrainInfo: A central database for resolving microbial strain identifiers