Strain identifier
BacDive ID: 6400
Type strain:
Species: Lactobacillus sp.
Strain Designation: S-24
Strain history: <- K. Nosiro, S-24
NCBI tax ID(s): 1591 (species)
version 8.1 (current version)
General
@ref: 8616
BacDive-ID: 6400
DSM-Number: 20354
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Lactobacillus sp. S-24 is a mesophilic bacterium that was isolated from spoilt sake.
NCBI tax id
- NCBI tax id: 1591
- Matching level: species
strain history
- @ref: 8616
- history: <- K. Nosiro, S-24
doi: 10.13145/bacdive6400.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Lactobacillus
- species: Lactobacillus sp.
- full scientific name: Lactobacillus Beijerinck 1901 (Approved Lists 1980)
@ref: 8616
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Lactobacillus
species: Lactobacillus sp.
full scientific name: Lactobacillus sp.
strain designation: S-24
type strain: no
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | no | 98.199 | |
69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 8616
- name: LACTOBACILLUS MEDIUM II (DSMZ Medium 93)
- growth: yes
- link: https://mediadive.dsmz.de/medium/93
- composition: Name: LACTOBACILLUS MEDIUM II (DSMZ Medium 93) Composition: Na-acetate 20.0 g/l Glucose 20.0 g/l Agar 15.0 g/l Casein peptone 10.0 g/l Yeast extract 5.0 g/l Meat extract 2.0 g/l K2HPO4 0.5 g/l KH2PO4 0.5 g/l MgSO4 x 7 H2O 0.2 g/l DL-mevalonic acid 0.03 g/l FeSO4 x 7 H2O 0.01 g/l MnSO4 x H2O 0.0075 g/l Tween 80 Ethanol Distilled water
culture temp
- @ref: 8616
- growth: positive
- type: growth
- temperature: 26
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 100 |
murein
- @ref: 8616
- murein short key: A11.31
- type: A4alpha L-Lys-D-Asp
Isolation, sampling and environmental information
isolation
- @ref: 8616
- sample type: spoilt sake
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Food production | #Fermented |
#Environmental | #Microbial community | |
#Engineered | #Food production | #Beverage |
taxonmaps
- @ref: 69479
- File name: preview.99_7067.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_46;96_3312;97_4062;98_5193;99_7067&stattab=map
- Last taxonomy: Lactobacillus acetotolerans subclade
- 16S sequence: AB680370
- Sequence Identity:
- Total samples: 9628
- soil counts: 1475
- aquatic counts: 1136
- animal counts: 6619
- plant counts: 398
Sequence information
16S sequences
- @ref: 20218
- description: Lactobacillus homohiochii gene for 16S rRNA, partial sequence, strain: NBRC 13120
- accession: AB680370
- length: 1495
- database: ena
- NCBI tax ID: 33961
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Lactobacillus acetotolerans NBRC 13120 | GCA_001042405 | complete | ncbi | 1600 |
66792 | Lactobacillus acetotolerans strain NBRC 13120 | 1600.4 | complete | patric | 1600 |
66792 | Lactobacillus acetotolerans NBRC 13120 | 2651869842 | complete | img | 1600 |
GC content
- @ref: 8616
- GC-content: 34.6
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 95.924 | no |
flagellated | no | 98.937 | no |
gram-positive | yes | 96.756 | no |
anaerobic | yes | 77.283 | no |
aerobic | no | 97.68 | no |
halophile | yes | 78.809 | no |
spore-forming | no | 97.843 | no |
glucose-util | yes | 93.327 | no |
thermophile | no | 98.082 | no |
glucose-ferment | yes | 90.624 | no |
External links
@ref: 8616
culture collection no.: DSM 20354, ATCC 27744, IFO 13120, NBRC 13120
straininfo link
- @ref: 75873
- straininfo: 39152
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
8616 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20354) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-20354 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
75873 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID39152.1 | StrainInfo: A central database for resolving microbial strain identifiers |