Strain identifier
BacDive ID: 6389
Type strain: 
Species: Pediococcus pentosaceus
Strain Designation: 243d
Strain history: <- W. Back, 243d (Pediococcus pentosaceus subsp. intermedius)
NCBI tax ID(s): 1255 (species)
version 9.3 (current version)
General
@ref: 8687
BacDive-ID: 6389
DSM-Number: 20280
keywords: genome sequence, Bacteria, mesophilic
description: Pediococcus pentosaceus 243d is a mesophilic bacterium that was isolated from brewery yeast.
NCBI tax id
- NCBI tax id: 1255
- Matching level: species
strain history
- @ref: 8687
- history: <- W. Back, 243d (Pediococcus pentosaceus subsp. intermedius)
doi: 10.13145/bacdive6389.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Lactobacillaceae
- genus: Pediococcus
- species: Pediococcus pentosaceus
- full scientific name: Pediococcus pentosaceus Mees 1934 (Approved Lists 1980)
@ref: 8687
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Lactobacillaceae
genus: Pediococcus
species: Pediococcus pentosaceus
full scientific name: Pediococcus pentosaceus Mees 1934
strain designation: 243d
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 125438 | no | 91.5 | |
| 125438 | 95.234 | positive |
Culture and growth conditions
culture medium
- @ref: 8687
- name: MRS MEDIUM (DSMZ Medium 11)
- growth: yes
- link: https://mediadive.dsmz.de/medium/11
- composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
culture temp
- @ref: 8687
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: microaerophile
- confidence: 96.3
spore formation
- @ref: 125438
- spore formation: no
- confidence: 90.467
murein
- @ref: 8687
- murein short key: A11.31
- type: A4alpha L-Lys-D-Asp
Isolation, sampling and environmental information
isolation
- @ref: 8687
- sample type: brewery yeast
isolation source categories
- Cat1: #Host
- Cat2: #Yeast
Safety information
risk assessment
- @ref: 8687
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pediococcus pentosaceus strain DSM 20280 | 1255.180 | wgs | patric | 1255 |
| 66792 | Pediococcus pentosaceus strain FDAARGOS_1010 | 1255.196 | complete | patric | 1255 |
| 66792 | Pediococcus pentosaceus DSM 20280 | GCA_015613315 | scaffold | ncbi | 1255 |
GC content
- @ref: 8687
- GC-content: 38.7
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | microaerophile | 96.3 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | variable | 69.2 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 53.1 | |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 56.4 | |
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 95.234 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 85.134 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 90.467 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 96.358 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 97.409 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 91.5 | no |
External links
@ref: 8687
culture collection no.: DSM 20280
straininfo link
- @ref: 75862
- straininfo: 49598
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 8687 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20280) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-20280 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 75862 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49598.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |