Strain identifier
BacDive ID: 6374
Type strain: 
Species: Marvinbryantia formatexigens
Strain Designation: I-52
Strain history: <- T. L. Miller, New York State Department of Health, Albany, New York, USA; I-52 <- T. L. Miller and M. J. Wolin {1988}
NCBI tax ID(s): 478749 (strain), 168384 (species)
version 8.1 (current version)
General
@ref: 5367
BacDive-ID: 6374
DSM-Number: 14469
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive
description: Marvinbryantia formatexigens I-52 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from human feces.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 168384 | species |
| 478749 | strain |
strain history
- @ref: 5367
- history: <- T. L. Miller, New York State Department of Health, Albany, New York, USA; I-52 <- T. L. Miller and M. J. Wolin {1988}
doi: 10.13145/bacdive6374.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Lachnospiraceae
- genus: Marvinbryantia
- species: Marvinbryantia formatexigens
- full scientific name: Marvinbryantia formatexigens (Wolin et al. 2004) Wolin et al. 2008
synonyms
- @ref: 20215
- synonym: Bryantella formatexigens
@ref: 5367
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Lachnospiraceae
genus: Marvinbryantia
species: Marvinbryantia formatexigens
full scientific name: Marvinbryantia formatexigens (Wolin et al. 2004) Wolin et al. 2008
strain designation: I-52
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
colony morphology
- @ref: 57423
- incubation period: 4 days
Culture and growth conditions
culture medium
- @ref: 5367
- name: BLAUTIA MEDIUM (DSMZ Medium 915)
- growth: yes
- link: https://mediadive.dsmz.de/medium/915
- composition: Name: BLAUTIA MEDIUM (DSMZ Medium 915; with strain-specific modifications) Composition: NaHCO3 7.48503 g/l D-Glucose 4.99002 g/l Sodium acetate 2.49501 g/l Sodium formate 2.49501 g/l Trypticase peptone 1.99601 g/l NH4Cl 0.998004 g/l Na2S x 9 H2O 0.449102 g/l L-Cysteine HCl x H2O 0.449102 g/l K2HPO4 0.299401 g/l KH2PO4 0.299401 g/l (NH4)2SO4 0.299401 g/l MgSO4 x 7 H2O 0.0299401 g/l Nitrilotriacetic acid 0.0149701 g/l NaCl 0.00998004 g/l MnSO4 x H2O 0.00499002 g/l CoSO4 x 7 H2O 0.00179641 g/l ZnSO4 x 7 H2O 0.00179641 g/l CaCl2 x 2 H2O 0.000998004 g/l FeSO4 x 7 H2O 0.000998004 g/l Sodium resazurin 0.000499002 g/l NiCl2 x 6 H2O 0.000299401 g/l AlK(SO4)2 x 12 H2O 0.000199601 g/l Pyridoxine hydrochloride 0.000199601 g/l CuSO4 x 5 H2O 9.98004e-05 g/l p-Aminobenzoic acid 9.98004e-05 g/l Calcium D-(+)-pantothenate 9.98004e-05 g/l Nicotinic acid 9.98004e-05 g/l Riboflavin 9.98004e-05 g/l Thiamine HCl 9.98004e-05 g/l (DL)-alpha-Lipoic acid 9.98004e-05 g/l Na2MoO4 x 2 H2O 9.98004e-05 g/l H3BO3 9.98004e-05 g/l Biotin 3.99202e-05 g/l Folic acid 3.99202e-05 g/l Na2WO4 x 2 H2O 3.99202e-06 g/l Na2SeO3 x 5 H2O 2.99401e-06 g/l Vitamin B12 1.99601e-06 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 5367 | positive | growth | 37 | mesophilic |
| 57423 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 5367 | anaerobe | |
| 57423 | anaerobe | |
| 69480 | anaerobe | 99.66 |
spore formation
- @ref: 69480
- spore formation: no
- confidence: 97.698
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | sampling date |
|---|---|---|---|---|---|---|
| 5367 | human feces | New York State | USA | USA | North America | |
| 57423 | Human feces | NY,Albany | USA | USA | North America | 1987 |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
taxonmaps
- @ref: 69479
- File name: preview.99_5047.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16;96_2466;97_3009;98_3772;99_5047&stattab=map
- Last taxonomy: Marvinbryantia formatexigens subclade
- 16S sequence: NR_042152
- Sequence Identity:
- Total samples: 15271
- soil counts: 65
- aquatic counts: 162
- animal counts: 15021
- plant counts: 23
Safety information
risk assessment
- @ref: 5367
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5367
- description: Marvinbryantia formatexigens strain I-52 16S ribosomal RNA, partial sequence
- accession: NR_042152
- length: 1456
- database: nuccore
- NCBI tax ID: 168384
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Marvinbryantia formatexigens I-52 | GCA_900102475 | scaffold | ncbi | 168384 |
| 66792 | Marvinbryantia formatexigens DSM 14469 | GCA_000173815 | contig | ncbi | 478749 |
| 66792 | Marvinbryantia formatexigens DSM 14469 | 478749.5 | wgs | patric | 478749 |
| 66792 | Marvinbryantia formatexigens strain I-52 | 168384.3 | wgs | patric | 168384 |
| 66792 | Marvinbryantia formatexigens I-52 | 2562617090 | draft | img | 168384 |
| 66792 | Marvinbryantia formatexigens I-52 | 2599185228 | draft | img | 168384 |
| 66792 | Marvinbryantia formatexigens DSM 14469 | GCA_025148285 | complete | ncbi | 478749 |
| 66792 | Marvinbryantia formatexigens DSM 14469 | 478749.17 | complete | patric | 478749 |
GC content
- @ref: 5367
- GC-content: 50.3
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 59 | no |
| motile | no | 92.146 | no |
| flagellated | no | 92.215 | no |
| gram-positive | yes | 88.13 | no |
| anaerobic | yes | 99.181 | yes |
| aerobic | no | 98.089 | no |
| halophile | no | 85.169 | no |
| spore-forming | yes | 63.184 | no |
| glucose-ferment | yes | 68.064 | no |
| thermophile | no | 99.276 | no |
| glucose-util | yes | 90.295 | no |
External links
@ref: 5367
culture collection no.: DSM 14469, CCUG 46960
straininfo link
- @ref: 75847
- straininfo: 130835
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 5367 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14469) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14469 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 57423 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 46960) | https://www.ccug.se/strain?id=46960 | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 75847 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID130835.1 | StrainInfo: A central database for resolving microbial strain identifiers |