Strain identifier
BacDive ID: 6372
Type strain: 
Species: Syntrophococcus sucromutans
Strain Designation: S195
Strain history: <- M. P. Bryant, University of Illinois, Urbana, USA; S195 <- L. R. Krumholz {1983}
NCBI tax ID(s): 84037 (species)
version 8.1 (current version)
General
@ref: 1320
BacDive-ID: 6372
DSM-Number: 3224
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Syntrophococcus sucromutans S195 is an anaerobe, mesophilic bacterium that was isolated from rumen of cattle.
NCBI tax id
- NCBI tax id: 84037
- Matching level: species
strain history
- @ref: 1320
- history: <- M. P. Bryant, University of Illinois, Urbana, USA; S195 <- L. R. Krumholz {1983}
doi: 10.13145/bacdive6372.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Lachnospiraceae
- genus: Syntrophococcus
- species: Syntrophococcus sucromutans
- full scientific name: Syntrophococcus sucromutans Krumholz and Bryant 1986
@ref: 1320
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Lachnospiraceae
genus: Syntrophococcus
species: Syntrophococcus sucromutans
full scientific name: Syntrophococcus sucromutans Krumholz and Bryant 1986
strain designation: S195
type strain: yes
Culture and growth conditions
culture medium
- @ref: 1320
- name: SYNTROPHOCOCCUS SUCROMUTANS MEDIUM (DSMZ Medium 337)
- growth: yes
- link: https://mediadive.dsmz.de/medium/337
- composition: Name: SYNTROPHOCOCCUS SUCROMUTANS MEDIUM (DSMZ Medium 337) Composition: Lactose 4.96032 g/l Trypticase peptone 4.96032 g/l NaHCO3 2.48016 g/l Na-formate 0.595238 g/l KH2PO4 0.496032 g/l NH4Cl 0.396825 g/l NaCl 0.396825 g/l MgCl2 x 6 H2O 0.327381 g/l L-Cysteine HCl x H2O 0.238095 g/l Na2S x 9 H2O 0.077381 g/l CaCl2 x 2 H2O 0.0496032 g/l HCl 0.00248016 g/l FeCl2 x 4 H2O 0.0014881 g/l Sodium resazurin 0.000496032 g/l Pyridoxine hydrochloride 0.000297619 g/l Thiamine-HCl x 2 H2O 0.000198413 g/l Nicotinic acid 0.000198413 g/l CoCl2 x 6 H2O 0.000188492 g/l Calcium pantothenate 9.92064e-05 g/l MnCl2 x 4 H2O 9.92064e-05 g/l Vitamin B12 9.92064e-05 g/l p-Aminobenzoic acid 7.93651e-05 g/l ZnCl2 6.94444e-05 g/l Na2MoO4 x 2 H2O 3.57143e-05 g/l NiCl2 x 6 H2O 2.38095e-05 g/l D-(+)-biotin 1.98413e-05 g/l H3BO3 5.95238e-06 g/l CuCl2 x 2 H2O 1.98413e-06 g/l Distilled water
culture temp
- @ref: 1320
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 1320
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 1320
- sample type: rumen of cattle
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Bovinae (Cow, Cattle) |
| #Host Body-Site | #Organ | #Rumen |
taxonmaps
- @ref: 69479
- File name: preview.99_31089.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_348;96_15217;97_18583;98_23134;99_31089&stattab=map
- Last taxonomy: Syntrophococcus sucromutans subclade
- 16S sequence: Y18191
- Sequence Identity:
- Total samples: 6442
- soil counts: 359
- aquatic counts: 57
- animal counts: 5709
- plant counts: 317
Safety information
risk assessment
- @ref: 1320
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Syntrophococcus sucromutans strain S195 16S ribosomal RNA gene, partial sequence | JQ346731 | 1380 | ena | 84037 |
| 20218 | Syntrophococcus sucromutans 16S rRNA gene, partial, strain DSM 3224 | Y18191 | 1461 | ena | 84037 |
| 1320 | Syntrophococcus sucromutans 16S ribosomal RNA gene, partial sequence | AF202264 | 1535 | ena | 84037 |
GC content
- @ref: 1320
- GC-content: 52.0
External links
@ref: 1320
culture collection no.: DSM 3224
straininfo link
- @ref: 75845
- straininfo: 46058
literature
- topic: Phylogeny
- Pubmed-ID: 34499596
- title: Novisyntrophococcus fermenticellae gen. nov., sp. nov., isolated from an anaerobic fermentation cellar of Chinese strong-flavour baijiu.
- authors: Chai LJ, Fang GY, Xu PX, Zhang XJ, Lu ZM, Zhang SY, Wang ST, Shen CH, Shi JS, Xu ZH
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004991
- year: 2021
- mesh: Anaerobiosis, Bacterial Typing Techniques, Base Composition, China, Clostridiales/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Fermentation, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology
- topic2: Transcriptome
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1320 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3224) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-3224 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 75845 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID46058.1 | StrainInfo: A central database for resolving microbial strain identifiers |