Strain identifier
BacDive ID: 6320
Type strain: 
Species: Kineococcus glutinatus
Strain history: S.-K. Tang YIM 75677.
NCBI tax ID(s): 1070872 (species)
version 8.1 (current version)
General
@ref: 18272
BacDive-ID: 6320
DSM-Number: 26692
keywords: 16S sequence, Bacteria, mesophilic
description: Kineococcus glutinatus DSM 26692 is a mesophilic bacterium that was isolated from soil at dry-hot river valley site.
NCBI tax id
- NCBI tax id: 1070872
- Matching level: species
strain history
| @ref | history |
|---|---|
| 18272 | <- JCM <- S.-K. Tang; YIM 75677 |
| 67770 | S.-K. Tang YIM 75677. |
doi: 10.13145/bacdive6320.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kineosporiales
- family: Kineosporiaceae
- genus: Kineococcus
- species: Kineococcus glutinatus
- full scientific name: Kineococcus glutinatus corrig. Nie et al. 2012
synonyms
- @ref: 20215
- synonym: Kineococcus glutineturens
@ref: 18272
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Kineosporiaceae
genus: Kineococcus
species: Kineococcus glutinatus
full scientific name: Kineococcus glutinatus Nie et al. 2012
type strain: yes
Culture and growth conditions
culture medium
- @ref: 18272
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 18272 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-9(H2)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 18272 | soil at dry-hot river valley site | Yunnan Province | China | CHN | Asia |
| 67770 | Soil at a dry-hot river valley site | Yunnan Province | China | CHN | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_143105.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_13736;97_16722;98_20758;99_143105&stattab=map
- Last taxonomy: Kineococcus glutinatus
- 16S sequence: JN188946
- Sequence Identity:
- Total samples: 32
- soil counts: 29
- animal counts: 2
- plant counts: 1
Safety information
risk assessment
- @ref: 18272
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Kineococcus glutinatus strain YIM 75677 16S ribosomal RNA gene, partial sequence | JN188946 | 1503 | ena | 1070872 |
| 18272 | Kineococcus glutinatus strain YIM 75677 16S ribosomal RNA gene, partial sequence | JQ314347 | 1503 | ena | 1070872 |
GC content
- @ref: 18272
- GC-content: 74.8
- method: high performance liquid chromatography (HPLC)
External links
@ref: 18272
culture collection no.: DSM 26692, CCTCC AA 209075, JCM 18126, YIM 75677, NBRC 111526
straininfo link
- @ref: 75794
- straininfo: 402043
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 22467136 | Kineococcus glutineturens sp. nov., isolated from soil in Yunnan, south-west China. | Nie GX, Ming H, Zhang J, Feng HG, Li S, Yu TT, Zhou EM, Tang SK, Li WJ | Antonie Van Leeuwenhoek | 10.1007/s10482-012-9731-1 | 2012 | Actinomycetales/*classification/genetics/*isolation & purification, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology | Genetics |
| Phylogeny | 32973710 | Description of Chloramphenicol Resistant Kineococcus rubinsiae sp. nov. Isolated From a Spacecraft Assembly Facility. | Mhatre S, Singh NK, Wood JM, Parker CW, Pukall R, Verbarg S, Tindall BJ, Neumann-Schaal M, Venkateswaran K | Front Microbiol | 10.3389/fmicb.2020.01957 | 2020 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 18272 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26692) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26692 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 75794 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID402043.1 | StrainInfo: A central database for resolving microbial strain identifiers |