Strain identifier
BacDive ID: 6301
Type strain: 
Species: Nostocoides limicola
Strain history: NCIMB 14129 <-- R. J. Seviour Ver 1.
NCBI tax ID(s): 330836 (species)
version 8.1 (current version)
General
@ref: 7039
BacDive-ID: 6301
DSM-Number: 17520
keywords: 16S sequence, Bacteria, mesophilic
description: Nostocoides limicola DSM 17520 is a mesophilic bacterium that was isolated from activated sludge plant.
NCBI tax id
- NCBI tax id: 330836
- Matching level: species
strain history
| @ref | history |
|---|---|
| 7039 | <- R. J. Seviour <- V. Tandoi |
| 67770 | NCIMB 14129 <-- R. J. Seviour Ver 1. |
doi: 10.13145/bacdive6301.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Intrasporangiaceae
- genus: Nostocoides
- species: Nostocoides limicola
- full scientific name: Candidatus Nostocoides limicola corrig. Blackall et al. 2000
synonyms
@ref synonym 20215 Nostocoida limicola 20215 Tetrasphaera veronensis
@ref: 7039
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Intrasporangiaceae
genus: Tetrasphaera
species: Tetrasphaera veronensis
full scientific name: Tetrasphaera veronensis McKenzie et al. 2006
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 7039 | R2A MEDIUM (DSMZ Medium 830) | yes | https://mediadive.dsmz.de/medium/830 | Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water |
| 7039 | PYGV AGAR (DSMZ Medium 621) | yes | https://mediadive.dsmz.de/medium/621 | Name: PYGV AGAR (DSMZ Medium 621) Composition: Agar 15.0 g/l MgSO4 x 7 H2O 0.625264 g/l Glucose 0.25 g/l Peptone 0.25 g/l Yeast extract 0.25 g/l Nitrilotriacetic acid 0.210526 g/l CaCl2 x 2 H2O 0.0703158 g/l FeSO4 x 7 H2O 0.00208422 g/l Na2MoO4 x 2 H2O 0.000266736 g/l Pyridoxine hydrochloride 0.0001 g/l p-Aminobenzoic acid 5e-05 g/l D-Calcium pantothenate 5e-05 g/l Nicotinamide 5e-05 g/l Thiamine-HCl x 2 H2O 5e-05 g/l Riboflavine 5e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l Vitamin B12 1e-06 g/l Metall salt sol. 44 Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 7039 | positive | growth | 25 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 7039 | activated sludge plant | Verona | Italy | ITA | Europe |
| 67770 | Activated sludge plant | Verona | Italy | ITA | Europe |
isolation source categories
- Cat1: #Engineered
- Cat2: #Waste
- Cat3: #Activated sludge
Safety information
risk assessment
- @ref: 7039
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7039
- description: Tetrasphaera veronensis partial 16S rRNA gene, type strain Ver 1T
- accession: Y14595
- length: 1448
- database: ena
- NCBI tax ID: 330836
External links
@ref: 7039
culture collection no.: DSM 17520, NCIMB 14129, Ver 1, JCM 15592, KCTC 39577
straininfo link
- @ref: 75776
- straininfo: 297355
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 10758878 | 'Candidatus Nostocoida limicola', a filamentous bacterium from activated sludge. | Blackall LL, Seviour EM, Bradford D, Rossetti S, Tandoi V, Seviour RJ | Int J Syst Evol Microbiol | 10.1099/00207713-50-2-703 | 2000 | Actinomycetales/*classification/cytology/isolation & purification/physiology, Culture Media, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Molecular Sequence Data, Nucleic Acid Conformation, Phenotype, Phylogeny, Polyphosphates/metabolism, RNA, Bacterial/chemistry/genetics, RNA, Ribosomal, 16S/chemistry/genetics, Sequence Analysis, DNA, Sewage/*microbiology, Temperature | Cultivation |
| Phylogeny | 17012548 | Isolates of 'Candidatus Nostocoida limicola' Blackall et al. 2000 should be described as three novel species of the genus Tetrasphaera, as Tetrasphaera jenkinsii sp. nov., Tetrasphaera vanveenii sp. nov. and Tetrasphaera veronensis sp. nov. | McKenzie CM, Seviour EM, Schumann P, Maszenan AM, Liu JR, Webb RI, Monis P, Saint CP, Steiner U, Seviour RJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.63978-0 | 2006 | Actinobacteria/chemistry/*classification/genetics/isolation & purification, Actinomycetales/chemistry/*classification/genetics/isolation & purification, Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal Spacer/analysis, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S/genetics, Sequence Analysis, DNA, Sewage/microbiology, Species Specificity | Enzymology |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 7039 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17520) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17520 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 75776 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297355.1 | StrainInfo: A central database for resolving microbial strain identifiers |