Strain identifier
BacDive ID: 6299
Type strain: 
Species: Tetrasphaera vanveenii
Strain history: NCIMB 14127 <-- R. J. Seviour Ben 70.
NCBI tax ID(s): 330835 (species)
version 8.1 (current version)
General
@ref: 7037
BacDive-ID: 6299
DSM-Number: 17518
keywords: 16S sequence, Bacteria, mesophilic
description: Tetrasphaera vanveenii DSM 17518 is a mesophilic bacterium that was isolated from activated sludge.
NCBI tax id
- NCBI tax id: 330835
- Matching level: species
strain history
| @ref | history |
|---|---|
| 7037 | <- R. J. Seviour; Ben 70 <- E. M. Seviour |
| 67770 | NCIMB 14127 <-- R. J. Seviour Ben 70. |
doi: 10.13145/bacdive6299.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Intrasporangiaceae
- genus: Tetrasphaera
- species: Tetrasphaera vanveenii
- full scientific name: Tetrasphaera vanveenii McKenzie et al. 2006
@ref: 7037
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Intrasporangiaceae
genus: Tetrasphaera
species: Tetrasphaera vanveenii
full scientific name: Tetrasphaera vanveenii McKenzie et al. 2006
type strain: yes
Culture and growth conditions
culture medium
- @ref: 7037
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 7037 | positive | growth | 25 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-8, MK-8(H2)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 7037 | activated sludge | Carrum, Victoria | Australia | AUS | Australia and Oceania |
| 67770 | Activated sludge plant | Carrum, Victoria | Australia | AUS | Australia and Oceania |
isolation source categories
- Cat1: #Engineered
- Cat2: #Waste
- Cat3: #Activated sludge
taxonmaps
- @ref: 69479
- File name: preview.99_138590.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_1391;97_2813;98_3495;99_138590&stattab=map
- Last taxonomy: Tetrasphaera vanveenii
- 16S sequence: DQ007320
- Sequence Identity:
- Total samples: 27
- soil counts: 1
- aquatic counts: 23
- animal counts: 3
Safety information
risk assessment
- @ref: 7037
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7037
- description: Tetrasphaera vanveenii strain Ben 70 16S ribosomal RNA gene, partial sequence
- accession: DQ007320
- length: 1418
- database: ena
- NCBI tax ID: 330835
External links
@ref: 7037
culture collection no.: DSM 17518, NCIMB 14127, Ben 70, JCM 15591, KCTC 39576
straininfo link
- @ref: 75774
- straininfo: 297354
literature
- topic: Phylogeny
- Pubmed-ID: 17012548
- title: Isolates of 'Candidatus Nostocoida limicola' Blackall et al. 2000 should be described as three novel species of the genus Tetrasphaera, as Tetrasphaera jenkinsii sp. nov., Tetrasphaera vanveenii sp. nov. and Tetrasphaera veronensis sp. nov.
- authors: McKenzie CM, Seviour EM, Schumann P, Maszenan AM, Liu JR, Webb RI, Monis P, Saint CP, Steiner U, Seviour RJ
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.63978-0
- year: 2006
- mesh: Actinobacteria/chemistry/*classification/genetics/isolation & purification, Actinomycetales/chemistry/*classification/genetics/isolation & purification, Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal Spacer/analysis, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S/genetics, Sequence Analysis, DNA, Sewage/microbiology, Species Specificity
- topic2: Enzymology
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 7037 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17518) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17518 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 75774 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297354.1 | StrainInfo: A central database for resolving microbial strain identifiers |