Strain identifier
BacDive ID: 6274
Type strain: 
Species: Ornithinicoccus hortensis
Strain Designation: 2115-021
Strain history: I. Groth HKI 0131 <-- Ch. Weigel 2115-021.
NCBI tax ID(s): 82346 (species)
version 8.1 (current version)
General
@ref: 4701
BacDive-ID: 6274
DSM-Number: 12336
keywords: Bacteria, mesophilic
description: Ornithinicoccus hortensis 2115-021 is a mesophilic bacterium that was isolated from garden soil.
NCBI tax id
- NCBI tax id: 82346
- Matching level: species
strain history
| @ref | history |
|---|---|
| 4701 | <- I. Groth <- Ch. Weigel; 2115 (= HKI 0131) |
| 67770 | I. Groth HKI 0131 <-- Ch. Weigel 2115-021. |
doi: 10.13145/bacdive6274.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Intrasporangiaceae
- genus: Ornithinicoccus
- species: Ornithinicoccus hortensis
- full scientific name: Ornithinicoccus hortensis Groth et al. 1999
@ref: 4701
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Intrasporangiaceae
genus: Ornithinicoccus
species: Ornithinicoccus hortensis
full scientific name: Ornithinicoccus hortensis Groth et al. 1999
strain designation: 2115-021
type strain: no
Culture and growth conditions
culture medium
- @ref: 4701
- name: RICH MEDIUM (DSMZ Medium 736)
- growth: yes
- link: https://mediadive.dsmz.de/medium/736
- composition: Name: RICH MEDIUM (DSMZ Medium 736) Composition: Agar 20.0 g/l Bacto peptone 10.0 g/l Yeast extract 5.0 g/l Malt extract 5.0 g/l Casamino acids 5.0 g/l Glycerol 2.0 g/l Meat extract 2.0 g/l MgSO4 x 7 H2O 1.0 g/l Tween 80 0.05 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 4701 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
murein
- @ref: 4701
- murein short key: A21.13
- type: A4ß L-Orn-Gly2-D-Glu
observation
- @ref: 67770
- observation: quinones: MK-8(H4)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 4701 | garden soil | Germany, Gießen | Germany | DEU | Europe |
| 67770 | Soil in a garden | Giessen | Germany | DEU | Europe |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Engineered | #Agriculture | #Garden |
Safety information
risk assessment
- @ref: 4701
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
GC content
| @ref | GC-content | method |
|---|---|---|
| 4701 | 72.3 | high performance liquid chromatography (HPLC) |
| 67770 | 72 | high performance liquid chromatography (HPLC) |
External links
@ref: 4701
culture collection no.: DSM 12336, HKI 0131, JCM 11539
straininfo link
- @ref: 75751
- straininfo: 49270
literature
- topic: Phylogeny
- Pubmed-ID: 10555353
- title: Ornithinicoccus hortensis gen. nov., sp. nov., a soil actinomycete which contains L-ornithine.
- authors: Groth I, Schumann P, Martin K, Schuetze B, Augsten K, Kramer I, Stackebrandt E
- journal: Int J Syst Bacteriol
- DOI: 10.1099/00207713-49-4-1717
- year: 1999
- mesh: Actinomycetales/*chemistry/*classification/metabolism, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Lipids/analysis, Molecular Sequence Data, Ornithine/*analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 4701 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12336) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12336 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 75751 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49270.1 | StrainInfo: A central database for resolving microbial strain identifiers |