Strain identifier
BacDive ID: 6268
Type strain:
Species: Janibacter alkaliphilus
Strain history: DSM 24723 <-- J. Li SCSIO 10480.
NCBI tax ID(s): 1069963 (species)
General
@ref: 17743
BacDive-ID: 6268
DSM-Number: 24723
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Janibacter alkaliphilus DSM 24723 is a mesophilic bacterium that was isolated from gorgonian coral .
NCBI tax id
- NCBI tax id: 1069963
- Matching level: species
strain history
@ref | history |
---|---|
17743 | <- J. Li, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China; SCSIO 10480 |
67770 | DSM 24723 <-- J. Li SCSIO 10480. |
doi: 10.13145/bacdive6268.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Intrasporangiaceae
- genus: Janibacter
- species: Janibacter alkaliphilus
- full scientific name: Janibacter alkaliphilus Li et al. 2012
@ref: 17743
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Intrasporangiaceae
genus: Janibacter
species: Janibacter alkaliphilus
full scientific name: Janibacter alkaliphilus Li et al. 2012
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | no | 94.066 | |
69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 17743
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
17743 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.978
observation
- @ref: 67770
- observation: quinones: MK-8(H4)
Isolation, sampling and environmental information
isolation
@ref | sample type | host species | country | origin.country | continent |
---|---|---|---|---|---|
17743 | gorgonian coral (Anthogorgia sp.) | Anthogorgia | China | CHN | Asia |
67770 | Gorgonian coral (Anthogorgia sp.) | Anthogorgia sp. |
isolation source categories
- Cat1: #Host
- Cat2: #Invertebrates (Other)
- Cat3: #Cnidaria (Corals)
Safety information
risk assessment
- @ref: 17743
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17743
- description: Janibacter alkaliphilus strain SCSIO 10480 16S ribosomal RNA gene, partial sequence
- accession: JN160681
- length: 1408
- database: ena
- NCBI tax ID: 1069963
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Janibacter alkaliphilus strain DSM 24723 | 1069963.3 | wgs | patric | 1069963 |
66792 | Janibacter alkaliphilus DSM 24723 | 2842727864 | draft | img | 1069963 |
67770 | Janibacter alkaliphilus DSM 24723 | GCA_013408565 | contig | ncbi | 1069963 |
GC content
@ref | GC-content | method |
---|---|---|
17743 | 70.1 | |
67770 | 70.1 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 59 | no |
motile | no | 95.658 | no |
flagellated | no | 98.541 | no |
gram-positive | yes | 94.098 | no |
anaerobic | no | 99.13 | no |
aerobic | yes | 93.061 | no |
halophile | no | 84.452 | no |
spore-forming | no | 92.216 | no |
thermophile | no | 98.629 | yes |
glucose-util | yes | 80.222 | no |
glucose-ferment | no | 88.229 | no |
External links
@ref: 17743
culture collection no.: DSM 24723, CCTCC AB 2011027, JCM 19550, SCSIO 10480, NBRC 108804
straininfo link
- @ref: 75745
- straininfo: 400081
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 22456792 | Janibacter alkaliphilus sp. nov., isolated from coral Anthogorgia sp. | Li J, Long LJ, Yang LL, Xu Y, Wang FZ, Li QX, Zhang S, Li WJ | Antonie Van Leeuwenhoek | 10.1007/s10482-012-9723-1 | 2012 | Actinomycetales/*classification/genetics/*isolation & purification/physiology, Animals, Anthozoa/*microbiology, Aquatic Organisms/microbiology, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Hydrogen-Ion Concentration, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism | Genetics |
Phylogeny | 30798490 | Description of Janibacter massiliensis sp. nov., cultured from the vaginal discharge of a patient with bacterial vaginosis. | Maaloum M, Diop K, Diop A, Anani H, Tomei E, Richez M, Rathored J, Bretelle F, Raoult D, Fenollar F, Fournier PE | Antonie Van Leeuwenhoek | 10.1007/s10482-019-01247-x | 2019 | Actinobacteria/*classification/genetics/*isolation & purification/physiology, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Female, France, Humans, Middle Aged, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vaginal Discharge/*microbiology, Vaginosis, Bacterial/*microbiology, Whole Genome Sequencing | Pathogenicity |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
17743 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24723) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24723 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
75745 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID400081.1 | StrainInfo: A central database for resolving microbial strain identifiers |