Strain identifier

BacDive ID: 6268

Type strain: Yes

Species: Janibacter alkaliphilus

Strain history: DSM 24723 <-- J. Li SCSIO 10480.

NCBI tax ID(s): 1069963 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 17743

BacDive-ID: 6268

DSM-Number: 24723

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Janibacter alkaliphilus DSM 24723 is a mesophilic bacterium that was isolated from gorgonian coral .

NCBI tax id

  • NCBI tax id: 1069963
  • Matching level: species

strain history

@refhistory
17743<- J. Li, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China; SCSIO 10480
67770DSM 24723 <-- J. Li SCSIO 10480.

doi: 10.13145/bacdive6268.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Intrasporangiaceae
  • genus: Janibacter
  • species: Janibacter alkaliphilus
  • full scientific name: Janibacter alkaliphilus Li et al. 2012

@ref: 17743

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Intrasporangiaceae

genus: Janibacter

species: Janibacter alkaliphilus

full scientific name: Janibacter alkaliphilus Li et al. 2012

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no94.066
69480100positive

Culture and growth conditions

culture medium

  • @ref: 17743
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
17743positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.978

observation

  • @ref: 67770
  • observation: quinones: MK-8(H4)

Isolation, sampling and environmental information

isolation

@refsample typehost speciescountryorigin.countrycontinent
17743gorgonian coral (Anthogorgia sp.)AnthogorgiaChinaCHNAsia
67770Gorgonian coral (Anthogorgia sp.)Anthogorgia sp.

isolation source categories

  • Cat1: #Host
  • Cat2: #Invertebrates (Other)
  • Cat3: #Cnidaria (Corals)

Safety information

risk assessment

  • @ref: 17743
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17743
  • description: Janibacter alkaliphilus strain SCSIO 10480 16S ribosomal RNA gene, partial sequence
  • accession: JN160681
  • length: 1408
  • database: ena
  • NCBI tax ID: 1069963

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Janibacter alkaliphilus strain DSM 247231069963.3wgspatric1069963
66792Janibacter alkaliphilus DSM 247232842727864draftimg1069963
67770Janibacter alkaliphilus DSM 24723GCA_013408565contigncbi1069963

GC content

@refGC-contentmethod
1774370.1
6777070.1high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes59no
motileno95.658no
flagellatedno98.541no
gram-positiveyes94.098no
anaerobicno99.13no
aerobicyes93.061no
halophileno84.452no
spore-formingno92.216no
thermophileno98.629yes
glucose-utilyes80.222no
glucose-fermentno88.229no

External links

@ref: 17743

culture collection no.: DSM 24723, CCTCC AB 2011027, JCM 19550, SCSIO 10480, NBRC 108804

straininfo link

  • @ref: 75745
  • straininfo: 400081

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22456792Janibacter alkaliphilus sp. nov., isolated from coral Anthogorgia sp.Li J, Long LJ, Yang LL, Xu Y, Wang FZ, Li QX, Zhang S, Li WJAntonie Van Leeuwenhoek10.1007/s10482-012-9723-12012Actinomycetales/*classification/genetics/*isolation & purification/physiology, Animals, Anthozoa/*microbiology, Aquatic Organisms/microbiology, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Hydrogen-Ion Concentration, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolismGenetics
Phylogeny30798490Description of Janibacter massiliensis sp. nov., cultured from the vaginal discharge of a patient with bacterial vaginosis.Maaloum M, Diop K, Diop A, Anani H, Tomei E, Richez M, Rathored J, Bretelle F, Raoult D, Fenollar F, Fournier PEAntonie Van Leeuwenhoek10.1007/s10482-019-01247-x2019Actinobacteria/*classification/genetics/*isolation & purification/physiology, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Female, France, Humans, Middle Aged, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vaginal Discharge/*microbiology, Vaginosis, Bacterial/*microbiology, Whole Genome SequencingPathogenicity

Reference

@idauthorscataloguedoi/urltitle
17743Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24723)https://www.dsmz.de/collection/catalogue/details/culture/DSM-24723
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
75745Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID400081.1StrainInfo: A central database for resolving microbial strain identifiers