Strain identifier
BacDive ID: 6241
Type strain: 
Species: Arsenicicoccus piscis
Strain Designation: Kis4-19
Strain history: <- T. Tamura, Natl. Inst. of Technol. and Evaluation (NITE), Japan <- Lino and Iwami; Kis4-19
NCBI tax ID(s): 673954 (species)
version 8.1 (current version)
General
@ref: 16500
BacDive-ID: 6241
DSM-Number: 22760
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic
description: Arsenicicoccus piscis Kis4-19 is a microaerophile, mesophilic bacterium that was isolated from fish gut, Sillago japonica.
NCBI tax id
- NCBI tax id: 673954
- Matching level: species
strain history
- @ref: 16500
- history: <- T. Tamura, Natl. Inst. of Technol. and Evaluation (NITE), Japan <- Lino and Iwami; Kis4-19
doi: 10.13145/bacdive6241.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Dermatophilaceae
- genus: Arsenicicoccus
- species: Arsenicicoccus piscis
- full scientific name: Arsenicicoccus piscis Hamada et al. 2010
@ref: 16500
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Dermatophilaceae
genus: Arsenicicoccus
species: Arsenicicoccus piscis
full scientific name: Arsenicicoccus piscis Hamada et al. 2010
strain designation: Kis4-19
type strain: yes
Morphology
colony morphology
- @ref: 63034
- incubation period: 2 days
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 16500 | RICH MEDIUM (DSMZ Medium 736) | yes | https://mediadive.dsmz.de/medium/736 | Name: RICH MEDIUM (DSMZ Medium 736) Composition: Agar 20.0 g/l Bacto peptone 10.0 g/l Yeast extract 5.0 g/l Malt extract 5.0 g/l Casamino acids 5.0 g/l Glycerol 2.0 g/l Meat extract 2.0 g/l MgSO4 x 7 H2O 1.0 g/l Tween 80 0.05 g/l Distilled water |
| 16500 | R2A MEDIUM (DSMZ Medium 830) | yes | https://mediadive.dsmz.de/medium/830 | Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 63034 | positive | growth | 37 | mesophilic |
| 16500 | positive | growth | 28 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 63034
- oxygen tolerance: microaerophile
murein
- @ref: 16500
- murein short key: A42.01
- type: A3gamma' LL-Dpm-Gly
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 63034 C15:0 2.2 15 63034 C16:0 3.8 16 63034 C17:0 12.8 17 63034 C18:0 2.1 18 63034 C13:0 iso 1.9 12.612 63034 C14:0 ISO 7.9 13.618 63034 C15:0 ANTEISO 8.7 14.711 63034 C15:0 ISO 41.5 14.621 63034 C16:0 iso 9.8 15.626 63034 C17:0 anteiso 4.1 16.722 63034 C17:0 iso 3.9 16.629 63034 C17:1 ω8c 1.4 16.792 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 16500 | fish gut, Sillago japonica | Sillago japonica | Chiba prefecture, Awa | Japan | JPN | Asia |
| 63034 | Intestinal tract of fish,Sillago japonica | Awa,Chiba | Japan | JPN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Fishes | |
| #Host Body-Site | #Gastrointestinal tract | #Stomach |
Safety information
risk assessment
- @ref: 16500
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16500
- description: Arsenicicoccus piscis gene for 16S rRNA, partial sequence
- accession: AB521998
- length: 1477
- database: ena
- NCBI tax ID: 673954
Genome sequences
- @ref: 66792
- description: Arsenicicoccus piscis DSM 22760
- accession: GCA_022568835
- assembly level: contig
- database: ncbi
- NCBI tax ID: 673954
GC content
- @ref: 16500
- GC-content: 71.1
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 98.474 | no |
| gram-positive | yes | 90.603 | no |
| anaerobic | no | 97.846 | yes |
| aerobic | yes | 67.578 | yes |
| halophile | no | 96.402 | no |
| spore-forming | no | 89.313 | no |
| motile | no | 95.038 | no |
| glucose-ferment | no | 85.931 | no |
| thermophile | no | 94.622 | yes |
| glucose-util | yes | 86.154 | no |
External links
@ref: 16500
culture collection no.: DSM 22760, NBRC 105830, CCUG 63821
straininfo link
- @ref: 75720
- straininfo: 400084
literature
- topic: Phylogeny
- Pubmed-ID: 22888195
- title: Ornithinimicrobium murale sp. nov., isolated from an indoor wall colonized by moulds.
- authors: Kampfer P, Glaeser SP, Schafer J, Lodders N, Martin K, Schumann P
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.035873-0
- year: 2012
- mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Environmental Microbiology, Fatty Acids/analysis, Fungi/growth & development, Germany, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 16500 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22760) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22760 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 63034 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 63821) | https://www.ccug.se/strain?id=63821 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 75720 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID400084.1 | StrainInfo: A central database for resolving microbial strain identifiers |