Strain identifier

BacDive ID: 6200

Type strain: Yes

Species: Hirschia maritima

Strain Designation: GSW-2

Strain history: S. D. Lee GSW-2.

NCBI tax ID(s): 551275 (strain), 1121961 (species)

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General

@ref: 8130

BacDive-ID: 6200

DSM-Number: 19733

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Hirschia maritima GSW-2 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from seawater.

NCBI tax id

NCBI tax idMatching level
551275strain
1121961species

strain history

@refhistory
8130<- S. D. Lee, Cheju National Univ., Rep. of Korea; GSW-2
67770S. D. Lee GSW-2.

doi: 10.13145/bacdive6200.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Caulobacterales
  • family: Hyphomonadaceae
  • genus: Hirschia
  • species: Hirschia maritima
  • full scientific name: Hirschia maritima Kang and Lee 2009

@ref: 8130

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Caulobacterales

family: Hyphomonadaceae

genus: Hirschia

species: Hirschia maritima

full scientific name: Hirschia maritima Kang and Lee 2009

strain designation: GSW-2

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
29195negative1.2-1.3 µm0.6-1.1 µmrod-shapedyes
69480yes93.085
69480negative99.997

pigmentation

  • @ref: 29195
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 8130
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8130positivegrowth28mesophilic
29195positivegrowth10-30
29195positiveoptimum30mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
29195positivegrowth6.1-10.1alkaliphile
29195positiveoptimum8.6

Physiology and metabolism

oxygen tolerance

  • @ref: 29195
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no100

observation

  • @ref: 67770
  • observation: quinones: Q-10

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
29195620642,3-butanediol+carbon source
2919530089acetate+carbon source
2919516449alanine+carbon source
2919522599arabinose+carbon source
2919528757fructose+carbon source
2919524265gluconate+carbon source
2919517234glucose+carbon source
2919529987glutamate+carbon source
2919517754glycerol+carbon source
2919529864mannitol+carbon source
2919537684mannose+carbon source
2919551850methyl pyruvate+carbon source
2919517268myo-inositol+carbon source
2919550048phenylethylamine+carbon source
2919526271proline+carbon source
2919517272propionate+carbon source
2919517148putrescine+carbon source
2919526490quinate+carbon source
2919517822serine+carbon source
2919530911sorbitol+carbon source
2919517992sucrose+carbon source
2919527082trehalose+carbon source
2919553423tween 40+carbon source
2919553426tween 80+carbon source
291954853esculin+hydrolysis

enzymes

@refvalueactivityec
29195acid phosphatase+3.1.3.2
29195alkaline phosphatase+3.1.3.1
29195catalase+1.11.1.6
29195cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
8130seawaterJeju, Kymnyeong BeachRepublic of KoreaKORAsia
67770Seawater from Kimnyeong Beach on the coast of JejuRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_3688.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_416;96_1904;97_2291;98_2820;99_3688&stattab=map
  • Last taxonomy: Hirschia maritima subclade
  • 16S sequence: FM202386
  • Sequence Identity:
  • Total samples: 1005
  • soil counts: 54
  • aquatic counts: 864
  • animal counts: 81
  • plant counts: 6

Safety information

risk assessment

  • @ref: 8130
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 8130
  • description: Hirschia sp. GSW-2 partial 16S rRNA gene, type strain GSW-2T
  • accession: FM202386
  • length: 1336
  • database: ena
  • NCBI tax ID: 551275

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Hirschia maritima DSM 19733551275.6wgspatric551275
66792Hirschia maritima DSM 197332519899518draftimg551275
67770Hirschia maritima DSM 19733GCA_000378345scaffoldncbi551275

GC content

@refGC-contentmethod
813044.5high performance liquid chromatography (HPLC)
2919544.5

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno99.191no
anaerobicno98.896no
halophileno73.834no
spore-formingno97.252no
glucose-utilyes85.23yes
thermophileno84.542no
aerobicyes88.837yes
motileyes90.925yes
flagellatedno52.67no
glucose-fermentno90.413no

External links

@ref: 8130

culture collection no.: DSM 19733, JCM 14974

straininfo link

  • @ref: 75680
  • straininfo: 397264

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19620361Hirschia maritima sp. nov., isolated from seawater.Kang HS, Lee SDInt J Syst Evol Microbiol10.1099/ijs.0.008326-02009Aerobiosis, Alphaproteobacteria/*classification/cytology/genetics/*isolation & purification, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Flagella/physiology, Hydrogen-Ion Concentration, Microscopy, Electron, Transmission, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Pigments, Biological/biosynthesis, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, TemperatureGenetics
Phylogeny22904229Hirschia litorea sp. nov., isolated from seashore sediment, and emended description of the genus Hirschia.Park S, Yoon JHInt J Syst Evol Microbiol10.1099/ijs.0.044297-02012Alphaproteobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylglycerols/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/analysisGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
8130Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19733)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19733
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29195Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2561828776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
75680Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID397264.1StrainInfo: A central database for resolving microbial strain identifiers