Strain identifier

BacDive ID: 6196

Type strain: Yes

Species: Maritalea myrionectae

Strain Designation: CL-SK30

Strain history: <- B. C. Cho, Seoul Natl. Univ., Republic of Korea; CL-SK30

NCBI tax ID(s): 1122213 (strain), 454601 (species)

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General

@ref: 8149

BacDive-ID: 6196

DSM-Number: 19524

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Maritalea myrionectae CL-SK30 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from culture of the marine ciliate Myrionecta rubra.

NCBI tax id

NCBI tax idMatching level
454601species
1122213strain

strain history

  • @ref: 8149
  • history: <- B. C. Cho, Seoul Natl. Univ., Republic of Korea; CL-SK30

doi: 10.13145/bacdive6196.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Devosiaceae
  • genus: Maritalea
  • species: Maritalea myrionectae
  • full scientific name: Maritalea myrionectae Hwang et al. 2009

@ref: 8149

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Devosiaceae

genus: Maritalea

species: Maritalea myrionectae

full scientific name: Maritalea myrionectae Hwang et al. 2009

strain designation: CL-SK30

type strain: yes

Morphology

cell morphology

  • @ref: 28971
  • gram stain: negative
  • cell length: 1.0-2.0 µm
  • cell width: 0.4-0.5 µm
  • cell shape: rod-shaped

multimedia

@refmultimedia contentcaptionintellectual property rights
66793EM_DSM_19524_1.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_19524_2.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_19524_3.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_19524_4.jpgelectron microscopic image© HZI/Manfred Rohde

Culture and growth conditions

culture medium

  • @ref: 8149
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8149positivegrowth28mesophilic
28971positivegrowth10-40
28971positiveoptimum32.5mesophilic

culture pH

@refabilitytypepHPH range
28971positivegrowth6.3-9.8alkaliphile
28971positiveoptimum7.6

Physiology and metabolism

oxygen tolerance

  • @ref: 28971
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
28971NaClpositivegrowth1-10 %
28971NaClpositiveoptimum3.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2897122599arabinose+carbon source
2897129016arginine+carbon source
2897122653asparagine+carbon source
2897128757fructose+carbon source
2897128260galactose+carbon source
2897117234glucose+carbon source
2897129987glutamate+carbon source
2897117754glycerol+carbon source
2897117716lactose+carbon source
2897125017leucine+carbon source
2897129864mannitol+carbon source
2897137684mannose+carbon source
2897115361pyruvate+carbon source
2897117992sucrose+carbon source
2897127082trehalose+carbon source

enzymes

@refvalueactivityec
28971alkaline phosphatase+3.1.3.1
28971catalase+1.11.1.6
28971gelatinase+
28971cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 8149
  • sample type: culture of the marine ciliate Myrionecta rubra
  • host species: Myrionecta rubra
  • geographic location: Kunsan
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Engineered#Laboratory#Lab enrichment
#Environmental#Aquatic#Marine
#Host#Protozoa

taxonmaps

  • @ref: 69479
  • File name: preview.99_8057.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_3724;97_4576;98_5871;99_8057&stattab=map
  • Last taxonomy: Maritalea myrionectae
  • 16S sequence: EF988631
  • Sequence Identity:
  • Total samples: 590
  • soil counts: 198
  • aquatic counts: 344
  • animal counts: 34
  • plant counts: 14

Safety information

risk assessment

  • @ref: 8149
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 8149
  • description: Maritalea myrionectae strain CL-SK30 16S ribosomal RNA gene, partial sequence
  • accession: EF988631
  • length: 1352
  • database: ena
  • NCBI tax ID: 454601

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Maritalea myrionectae DSM 19524GCA_000423365scaffoldncbi1122213
66792Maritalea myrionectae DSM 195241122213.3wgspatric1122213
66792Maritalea myrionectae DSM 195242524614608draftimg1122213

GC content

  • @ref: 8149
  • GC-content: 52.7

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes90.204no
flagellatedyes67.147no
gram-positiveno96.2yes
anaerobicno99.308no
aerobicyes94.042yes
halophileno57.839no
spore-formingno95.324no
thermophileno96.794yes
glucose-utilyes89.189yes
glucose-fermentno92.338no

External links

@ref: 8149

culture collection no.: DSM 19524

straininfo link

  • @ref: 75676
  • straininfo: 403235

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19244448Maritalea myrionectae gen. nov., sp. nov., isolated from a culture of the marine ciliate Myrionecta rubra.Hwang CY, Cho KD, Yih W, Cho BCInt J Syst Evol Microbiol10.1099/ijs.0.002881-02009Animals, Bacterial Typing Techniques, Base Composition, Ciliophora/growth & development/*microbiology, Culture Media, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Hyphomicrobiaceae/*classification/genetics/isolation & purification/physiology, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species SpecificityCultivation
Phylogeny21317275Maritalea porphyrae sp. nov., isolated from a red alga (Porphyra yezoensis), and transfer of Zhangella mobilis to Maritalea mobilis comb. nov.Fukui Y, Abe M, Kobayashi M, Ishihara K, Oikawa H, Yano Y, Satomi MInt J Syst Evol Microbiol10.1099/ijs.0.028704-02011Aerobiosis, Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hyphomicrobiaceae/*classification/genetics/*isolation & purification/physiology, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodophyta/*microbiology, Sequence Analysis, DNAGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
8149Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19524)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19524
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
28971Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2540728776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793Mukherjee et al.10.1038/nbt.3886GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life28604660 35: 676-683 2017
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
75676Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID403235.1StrainInfo: A central database for resolving microbial strain identifiers