Strain identifier

BacDive ID: 6185

Type strain: Yes

Species: Hyphomicrobium sulfonivorans

Strain Designation: S1

Strain history: <- A. P. Wood; S1

NCBI tax ID(s): 121290 (species)

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General

@ref: 5178

BacDive-ID: 6185

DSM-Number: 13863

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Hyphomicrobium sulfonivorans S1 is a mesophilic bacterium that was isolated from garden soil.

NCBI tax id

  • NCBI tax id: 121290
  • Matching level: species

strain history

  • @ref: 5178
  • history: <- A. P. Wood; S1

doi: 10.13145/bacdive6185.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Hyphomicrobiaceae
  • genus: Hyphomicrobium
  • species: Hyphomicrobium sulfonivorans
  • full scientific name: Hyphomicrobium sulfonivorans Borodina et al. 2002

@ref: 5178

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Hyphomicrobiaceae

genus: Hyphomicrobium

species: Hyphomicrobium sulfonivorans

full scientific name: Hyphomicrobium sulfonivorans Borodina et al. 2002

strain designation: S1

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5178CORYNEBACTERIUM AGAR (DSMZ Medium 53)yeshttps://mediadive.dsmz.de/medium/53Name: CORYNEBACTERIUM AGAR (DSMZ Medium 53) Composition: Agar 15.0 g/l Casein peptone 10.0 g/l NaCl 5.0 g/l Glucose 5.0 g/l Yeast extract 5.0 g/l Distilled water
5178METHYLOTROPHIC ARTHROBACTER AND HYPHOMICROBIUM MEDIUM (DSMZ Medium 939)yeshttps://mediadive.dsmz.de/medium/939Name: METHYLOTROPHIC ARTHROBACTER AND HYPHOMICROBIUM MEDIUM (DSMZ Medium 939) Composition: Methanol 7.92 g/l Na2HPO4 x 2 H2O 7.9 g/l KH2PO4 1.5 g/l NH4Cl 0.8 g/l EDTA 0.5 g/l MgSO4 x 7 H2O 0.1 g/l CaCl2 x 2 H2O 0.0734 g/l FeSO4 x 7 H2O 0.05 g/l MnCl2 x 4 H2O 0.025 g/l ZnSO4 x 7 H2O 0.01 g/l CoCl2 x 6 H2O 0.005 g/l (NH4)6Mo7O24 0.005 g/l CuSO4 x 5 H2O 0.002 g/l Distilled water

culture temp

  • @ref: 5178
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 5178
  • sample type: garden soil
  • geographic location: Warwickshire
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Engineered#Agriculture#Garden

taxonmaps

  • @ref: 69479
  • File name: preview.99_6510.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_244;96_3082;97_3782;98_4804;99_6510&stattab=map
  • Last taxonomy: Hyphomicrobium sulfonivorans subclade
  • 16S sequence: AF235089
  • Sequence Identity:
  • Total samples: 1750
  • soil counts: 407
  • aquatic counts: 1191
  • animal counts: 98
  • plant counts: 54

Safety information

risk assessment

  • @ref: 5178
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 5178
  • description: Hyphomicrobium sulfonivorans 16S ribosomal RNA gene, partial sequence
  • accession: AF235089
  • length: 1411
  • database: ena
  • NCBI tax ID: 121290

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Hyphomicrobium sulfonivorans S1GCA_013306565contigncbi121290
66792Hyphomicrobium sulfonivorans S1GCA_016125985contigncbi121290
66792Hyphomicrobium sulfonivorans S12503692000draftimg121290

External links

@ref: 5178

culture collection no.: DSM 13863, ATCC BAA 113

straininfo link

  • @ref: 75667
  • straininfo: 87706

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5178Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13863)https://www.dsmz.de/collection/catalogue/details/culture/DSM-13863
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
75667Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID87706.1StrainInfo: A central database for resolving microbial strain identifiers