Archive BacDiveID:10.13145/bacdive6172.20230509.8.1

Strain identifier

BacDive ID: 6172

Type strain:

Species: Devosia glacialis

Strain Designation: Cr4-44

Strain history: <- R. Margesin, Inst. Microbiology, Univ. Innsbruck, Austria; Cr4-44

NCBI tax ID(s): 866566 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 17400

BacDive-ID: 6172

DSM-Number: 23846

keywords: 16S sequence, Bacteria, aerobe, psychrophilic, Gram-negative, motile, rod-shaped

description: Devosia glacialis Cr4-44 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from glacier cryoconite.

NCBI tax id

NCBI tax id: 866566
Matching level: species

strain history

@ref: 17400
history: <- R. Margesin, Inst. Microbiology, Univ. Innsbruck, Austria; Cr4-44

doi: 10.13145/bacdive6172.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Alphaproteobacteria
order: Hyphomicrobiales
family: Devosiaceae
genus: Devosia
species: Devosia glacialis
full scientific name: Devosia glacialis Zhang et al. 2012

@ref: 17400

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Devosiaceae

genus: Devosia

species: Devosia glacialis

full scientific name: Devosia glacialis Zhang et al. 2012

strain designation: Cr4-44

type strain: yes

Morphology

cell morphology

@ref: 29880
gram stain: negative
cell length: 1.5-2.0 µm
cell width: 0.6-0.8 µm
cell shape: rod-shaped
motility: yes

pigmentation

@ref: 29880
production: yes

Culture and growth conditions

culture medium

@ref: 17400
name: R2A MEDIUM (DSMZ Medium 830)
growth: yes
link: https://mediadive.dsmz.de/medium/830
composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@ref	growth	type	temperature	range
17400	positive	growth	20	psychrophilic
29880	positive	growth	1-20	psychrophilic

culture pH

@ref: 29880
ability: positive
type: optimum
pH: 07-08

Physiology and metabolism

oxygen tolerance

@ref: 29880
oxygen tolerance: aerobe

halophily

@ref: 29880
salt: NaCl
growth: positive
tested relation: optimum
concentration: 0-2 %

metabolite utilization

@ref: 29880
Chebi-ID: 17632
metabolite: nitrate
utilization activity: +
kind of utilization tested: reduction

enzymes

@ref	value	activity	ec
29880	acid phosphatase	+	3.1.3.2
29880	alkaline phosphatase	+	3.1.3.1
29880	catalase	+	1.11.1.6
29880	urease	+	3.5.1.5

Isolation, sampling and environmental information

isolation

@ref: 17400
sample type: glacier cryoconite
geographic location: Pasterze glacier below the Großglockner in the Hohe Tauern (47° 04' 28.12'' N 12° 44' 38.96'' E)
country: Austria
origin.country: AUT
continent: Europe
latitude: 47.0745
longitude: 12.7442

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Glacier
#Environmental	#Terrestrial	#Geologic
#Condition	#Psychrophilic (<10°C)

taxonmaps

@ref: 69479
File name: preview.99_11449.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_1058;97_1236;98_1484;99_11449&stattab=map
Last taxonomy: Devosia
16S sequence: HM474794
Sequence Identity:
Total samples: 10
soil counts: 1
aquatic counts: 8
plant counts: 1

Safety information

risk assessment

@ref: 17400
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 17400
description: Devosia glacialis strain Cr4-44 16S ribosomal RNA gene, partial sequence
accession: HM474794
length: 1474
database: ena
NCBI tax ID: 866566

GC content

@ref	GC-content	method
17400	63.6	thermal denaturation, midpoint method (Tm)
29880	63.6

External links

@ref: 17400

culture collection no.: DSM 23846, CGMCC 1.10691, LMG 26051

straininfo link

@ref: 75655
straininfo: 403734

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Phylogeny	21551324	Devosia psychrophila sp. nov. and Devosia glacialis sp. nov., from alpine glacier cryoconite, and an emended description of the genus Devosia.	Zhang DC, Redzic M, Liu HC, Zhou YG, Schinner F, Margesin R	Int J Syst Evol Microbiol	10.1099/ijs.0.023937-0	2011	Bacterial Typing Techniques, Base Composition, Cluster Analysis, Cold Temperature, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hyphomicrobiaceae/classification/genetics/isolation & purification/physiology, Ice Cover/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/analysis	Genetics
Phylogeny	23416574	Devosia submarina sp. nov., isolated from deep-sea surface sediments.	Romanenko LA, Tanaka N, Svetashev VI	Int J Syst Evol Microbiol	10.1099/ijs.0.046607-0	2013	DNA, Bacterial/genetics, Fatty Acids/analysis, Geologic Sediments/microbiology, Hyphomicrobiaceae/classification/genetics/isolation & purification, Japan, Lipids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/analysis, Water Microbiology	Genetics

Reference

@id	authors	catalogue	doi/url	title	ID_cross_reference	pubmed
17400	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23846)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-23846
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29880	Barberan A, Caceres Velazquez H, Jones S, Fierer N.		10.1128/mSphere.00237-17	Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information	26253	28776041
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
75655	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID403734.1	StrainInfo: A central database for resolving microbial strain identifiers