Strain identifier
BacDive ID: 6169
Type strain: 
Species: Devosia geojensis
Strain Designation: BD-c194
Culture col. no.: DSM 19414, KCTC 22082
version 5.0 (current version)
General
@ref: 8094
BacDive-ID: 6169
DSM-Number: 19414
keywords: gram-negative, mesophilic, aerobe, Bacteria, 16S sequence, genome sequence, motile, rod-shaped
description: Devosia geojensis BD-c194 is an aerobe, mesophilic, gram-negative bacterium that was isolated from diesel-contaminated soil.
strain history: <- C. O. Jeon, Gyeongsang Natl. Univ. (GSNU), Jinju, Korea; BD-c194
doi: 10.13145/bacdive6169.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/proteobacteria
- domain: Bacteria
- phylum: Proteobacteria
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Devosiaceae
- genus: Devosia
- species: Devosia geojensis
- full scientific name: Devosia geojensis Ryu et al. 2008
@ref: 8094
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Hyphomicrobiaceae
genus: Devosia
species: Devosia geojensis
full scientific name: Devosia geojensis Ryu et al. 2008
strain designation: BD-c194
type strain: yes
Morphology
cell morphology
- @ref: 32428
- gram stain: negative
- cell length: 1.5 µm
- cell width: 0.65 µm
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture medium
- @ref: 8094
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium830.pdf
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 8094 | positive | growth | 30 | mesophilic |
| 32428 | positive | growth | 30-35 | mesophilic |
| 32428 | positive | optimum | 32.5 | mesophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 32428 | positive | growth | 7.5-9 |
| 32428 | positive | optimum | 8.25 |
Physiology and metabolism
oxygen tolerance
- @ref: 32428
- oxygen tolerance: aerobe
spore formation
- @ref: 32428
- spore formation: no
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 32428 | 17234 | glucose | + | carbon source |
| 32428 | 17306 | maltose | + | carbon source |
| 32428 | 29864 | mannitol | + | carbon source |
| 32428 | 37684 | mannose | + | carbon source |
| 32428 | 506227 | N-acetylglucosamine | + | carbon source |
| 32428 | 4853 | esculin | + | hydrolysis |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 32428 | acid phosphatase | + | 3.1.3.2 |
| 32428 | alkaline phosphatase | + | 3.1.3.1 |
| 32428 | catalase | + | 1.11.1.6 |
| 32428 | cytochrome oxidase | + | 1.9.3.1 |
| 32428 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
- @ref: 8094
- sample type: diesel-contaminated soil
- geographic location: Geoje
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Contamination | #Oil (Fuel) |
| #Environmental | #Terrestrial | #Soil |
Safety information
risk assessment
- @ref: 8094
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 8094
- description: Devosia geojensis strain BD-c194 16S ribosomal RNA gene, partial sequence
- accession: EF575560
- length: 1449
- database: ena
- NCBI tax ID: 443610
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Devosia geojensis BD-c194 | GCA_000969415 | contig | ncbi | 443610 |
| 66792 | Devosia geojensis strain BD-c194 | 443610.3 | wgs | patric | 443610 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 8094 | 60.8 | high performance liquid chromatography (HPLC) |
| 32428 | 60.8 |
External links
@ref: 8094
culture collection no.: DSM 19414, KCTC 22082
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/801448 |
| 20218 | http://www.straininfo.net/strains/801449 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed | ID_cross_reference |
|---|---|---|---|---|---|---|---|
| 8094 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19414) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19414 | ||||
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | ||||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | ||
| 28651 | 10.1099/ijs.0.65481-0 | ||||||
| 32428 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28651 | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |