Strain identifier

BacDive ID: 6169

Type strain: Yes

Species: Devosia geojensis

Strain Designation: BD-c194

Culture col. no.: DSM 19414, KCTC 22082

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 8094

BacDive-ID: 6169

DSM-Number: 19414

keywords: gram-negative, mesophilic, aerobe, Bacteria, 16S sequence, genome sequence, motile, rod-shaped

description: Devosia geojensis BD-c194 is an aerobe, mesophilic, gram-negative bacterium that was isolated from diesel-contaminated soil.

strain history: <- C. O. Jeon, Gyeongsang Natl. Univ. (GSNU), Jinju, Korea; BD-c194

doi: 10.13145/bacdive6169.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Devosiaceae
  • genus: Devosia
  • species: Devosia geojensis
  • full scientific name: Devosia geojensis Ryu et al. 2008

@ref: 8094

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Hyphomicrobiaceae

genus: Devosia

species: Devosia geojensis

full scientific name: Devosia geojensis Ryu et al. 2008

strain designation: BD-c194

type strain: yes

Morphology

cell morphology

  • @ref: 32428
  • gram stain: negative
  • cell length: 1.5 µm
  • cell width: 0.65 µm
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

  • @ref: 8094
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium830.pdf

culture temp

@refgrowthtypetemperaturerange
8094positivegrowth30mesophilic
32428positivegrowth30-35mesophilic
32428positiveoptimum32.5mesophilic

culture pH

@refabilitytypepH
32428positivegrowth7.5-9
32428positiveoptimum8.25

Physiology and metabolism

oxygen tolerance

  • @ref: 32428
  • oxygen tolerance: aerobe

spore formation

  • @ref: 32428
  • spore formation: no

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3242817234glucose+carbon source
3242817306maltose+carbon source
3242829864mannitol+carbon source
3242837684mannose+carbon source
32428506227N-acetylglucosamine+carbon source
324284853esculin+hydrolysis

enzymes

@refvalueactivityec
32428acid phosphatase+3.1.3.2
32428alkaline phosphatase+3.1.3.1
32428catalase+1.11.1.6
32428cytochrome oxidase+1.9.3.1
32428urease+3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 8094
  • sample type: diesel-contaminated soil
  • geographic location: Geoje
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination#Oil (Fuel)
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 8094
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 8094
  • description: Devosia geojensis strain BD-c194 16S ribosomal RNA gene, partial sequence
  • accession: EF575560
  • length: 1449
  • database: ena
  • NCBI tax ID: 443610

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Devosia geojensis BD-c194GCA_000969415contigncbi443610
66792Devosia geojensis strain BD-c194443610.3wgspatric443610

GC content

@refGC-contentmethod
809460.8high performance liquid chromatography (HPLC)
3242860.8

External links

@ref: 8094

culture collection no.: DSM 19414, KCTC 22082

straininfo link

@refpassport
20218http://www.straininfo.net/strains/801448
20218http://www.straininfo.net/strains/801449

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
8094Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19414)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19414
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2865110.1099/ijs.0.65481-0
32428Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information28651
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)