Strain identifier

BacDive ID: 6167

Type strain: Yes

Species: Devosia insulae

Strain Designation: DS-56

Culture col. no.: DSM 17955, KCTC 12821

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 7288

BacDive-ID: 6167

DSM-Number: 17955

keywords: motile, gram-negative, mesophilic, Bacteria, 16S sequence, rod-shaped

description: Devosia insulae DS-56 is a mesophilic, gram-negative, motile bacterium that was isolated from soil.

strain history: <- J.-H. Yoon, KRIBB; DS-56

doi: 10.13145/bacdive6167.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Devosiaceae
  • genus: Devosia
  • species: Devosia insulae
  • full scientific name: Devosia insulae Yoon et al. 2007

@ref: 7288

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Hyphomicrobiaceae

genus: Devosia

species: Devosia insulae

full scientific name: Devosia insulae Yoon et al. 2007

strain designation: DS-56

type strain: yes

Morphology

cell morphology

  • @ref: 32140
  • gram stain: negative
  • cell length: 0.5-2.0 µm
  • cell width: 0.3-0.5 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 32140
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 7288
  • name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium545.pdf

culture temp

@refgrowthtypetemperaturerange
7288positivegrowth25mesophilic
32140positivegrowth10-31
32140positiveoptimum25mesophilic

culture pH

@refabilitytypepH
32140positivegrowth6.5-7.5
32140positiveoptimum7

Physiology and metabolism

halophily

@refsaltgrowthtested relationconcentration
32140NaClpositivegrowth0-2 %
32140NaClpositiveoptimum0.5 %

enzymes

  • @ref: 32140
  • value: urease
  • activity: +
  • ec: 3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 7288
  • sample type: soil
  • geographic location: Dokdo
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 7288
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
32140Devosia insulae strain DS-56 16S ribosomal RNA gene, partial sequenceEF012357.1437nuccore1116389
7288Devosia insulae strain DS-56 16S ribosomal RNA gene, partial sequenceEF0123571437ena1116389

GC content

@refGC-contentmethod
728866.2high performance liquid chromatography (HPLC)
3214066.2

External links

@ref: 7288

culture collection no.: DSM 17955, KCTC 12821

straininfo link

@refpassport
20218http://www.straininfo.net/strains/720624
20218http://www.straininfo.net/strains/720625

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
7288Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17955)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17955
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2838410.1099/ijs.0.65028-0
32140Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information28384