Strain identifier

BacDive ID: 6165

Type strain: Yes

Species: Devosia limi

Culture col. no.: DSM 17137, CIP 109005, LMG 22951

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General

@ref: 6784

BacDive-ID: 6165

DSM-Number: 17137

keywords: mesophilic, aerobe, Bacteria, 16S sequence, genome sequence, gram-negative, rod-shaped

description: Devosia limi DSM 17137 is an aerobe, mesophilic, gram-negative bacterium that was isolated from commercial nitrifying inoculum.

strain history: <- B. Vanparys, LMG

doi: 10.13145/bacdive6165.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Devosiaceae
  • genus: Devosia
  • species: Devosia limi
  • full scientific name: Devosia limi Vanparys et al. 2005

@ref: 6784

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Hyphomicrobiaceae

genus: Devosia

species: Devosia limi

full scientific name: Devosia limi Vanparys et al. 2005

type strain: yes

Morphology

cell morphology

  • @ref: 31510
  • gram stain: negative
  • cell length: 2 µm
  • cell width: 0.75 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 31510
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6784TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535), aerobicyeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf
33275MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
6784positivegrowth28mesophilic
31510positivegrowth28mesophilic
31510positiveoptimum28mesophilic
33275positivegrowth30mesophilic

culture pH

@refabilitytypepH
31510positivegrowth6.8
31510positiveoptimum6.8

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
6784aerobe
31510aerobe

spore formation

  • @ref: 31510
  • spore formation: no

observation

  • @ref: 31510
  • observation: aggregates in clumps

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3151025017leucine+carbon source
315104853esculin+hydrolysis

enzymes

@refvalueactivityec
31510alkaline phosphatase+3.1.3.1
31510catalase+1.11.1.6
31510cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 6784
  • sample type: commercial nitrifying inoculum
  • geographic location: Gent
  • country: Belgium
  • origin.country: BEL
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Industrial#Engineered product
#Host#Microbial#Bacteria

Safety information

risk assessment

  • @ref: 6784
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6784
  • description: Devosia sp. R-21940 partial 16S rRNA gene, type strain R-21940T
  • accession: AJ786801
  • length: 1437
  • database: ena
  • NCBI tax ID: 288995

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Devosia limi DSM 17137GCA_000970435contigncbi1121477
66792Devosia limi DSM 17137GCA_900128975scaffoldncbi1121477
66792Devosia limi DSM 171371121477.3wgspatric1121477
66792Devosia limi DSM 171371121477.5wgspatric1121477
66792Devosia limi DSM 171372582580747permanentimg1121477

GC content

  • @ref: 6784
  • GC-content: 61.9

External links

@ref: 6784

culture collection no.: DSM 17137, CIP 109005, LMG 22951

straininfo link

@refpassport
20218http://www.straininfo.net/strains/385852
20218http://www.straininfo.net/strains/691227
20218http://www.straininfo.net/strains/385829

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
6784Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17137)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17137
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2780610.1099/ijs.0.63714-0
31510Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information27806
33275Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6699
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)