Strain identifier
BacDive ID: 6163
Type strain:
Species: Blastochloris gulmargensis
Strain Designation: JA248
Strain history: <- C. Sasikala, Centre Environment, Inst. Sci. and Technol., J. N. T. Univ., Hyderabad, India; JA248 <- V. Venkata Ramana
NCBI tax ID(s): 432296 (species)
General
@ref: 8316
BacDive-ID: 6163
DSM-Number: 19786
keywords: 16S sequence, Bacteria, anaerobe
description: Blastochloris gulmargensis JA248 is an anaerobe bacterium that was isolated from yellow–green epilithic biofilm in a cold sulfur spring.
NCBI tax id
- NCBI tax id: 432296
- Matching level: species
strain history
- @ref: 8316
- history: <- C. Sasikala, Centre Environment, Inst. Sci. and Technol., J. N. T. Univ., Hyderabad, India; JA248 <- V. Venkata Ramana
doi: 10.13145/bacdive6163.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Blastochloridaceae
- genus: Blastochloris
- species: Blastochloris gulmargensis
- full scientific name: Blastochloris gulmargensis Venkata Ramana et al. 2011
@ref: 8316
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Hyphomicrobiaceae
genus: Blastochloris
species: Blastochloris gulmargensis
full scientific name: Blastochloris gulmargensis Venkata Ramana et al. 2011
strain designation: JA248
type strain: yes
Physiology and metabolism
oxygen tolerance
- @ref: 8316
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 8316
- sample type: yellow–green epilithic biofilm in a cold sulfur spring
- geographic location: Gulmarg (34.05° N 74.38° E)
- country: India
- origin.country: IND
- continent: Asia
- latitude: 34.05
- longitude: 74.38
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Spring |
#Environmental | #Biofilm | |
#Condition | #Sulfuric |
taxonmaps
- @ref: 69479
- File name: preview.99_38403.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_355;96_3273;97_4014;98_5120;99_38403&stattab=map
- Last taxonomy: Blastochloris gulmargensis
- 16S sequence: AM502287
- Sequence Identity:
- Total samples: 57
- soil counts: 31
- aquatic counts: 18
- animal counts: 3
- plant counts: 5
Safety information
risk assessment
- @ref: 8316
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 8316
- description: Blastochloris gulmargensis partial 16S rRNA gene, type strain JA248T
- accession: AM502287
- length: 1420
- database: ena
- NCBI tax ID: 432296
GC content
- @ref: 8316
- GC-content: 63.8
- method: high performance liquid chromatography (HPLC)
External links
@ref: 8316
culture collection no.: DSM 19786, JCM 14795
literature
- topic: Phylogeny
- Pubmed-ID: 20817841
- title: Blastochloris gulmargensis sp. nov., isolated from an epilithic phototrophic biofilm.
- authors: Venkata Ramana V, Kapoor S, Shobha E, Ramprasad EVV, Sasikala C, Ramana CV
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.025965-0
- year: 2010
- mesh: Alphaproteobacteria/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, *Biofilms, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Geologic Sediments/microbiology, Molecular Sequence Data, Phototrophic Processes, Phylogeny, RNA, Ribosomal, 16S/genetics, Soil Microbiology
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
8316 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19786) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19786 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta |