Strain identifier

BacDive ID: 6163

Type strain: Yes

Species: Blastochloris gulmargensis

Strain Designation: JA248

Strain history: <- C. Sasikala, Centre Environment, Inst. Sci. and Technol., J. N. T. Univ., Hyderabad, India; JA248 <- V. Venkata Ramana

NCBI tax ID(s): 432296 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 8316

BacDive-ID: 6163

DSM-Number: 19786

keywords: 16S sequence, Bacteria, anaerobe

description: Blastochloris gulmargensis JA248 is an anaerobe bacterium that was isolated from yellow–green epilithic biofilm in a cold sulfur spring.

NCBI tax id

  • NCBI tax id: 432296
  • Matching level: species

strain history

  • @ref: 8316
  • history: <- C. Sasikala, Centre Environment, Inst. Sci. and Technol., J. N. T. Univ., Hyderabad, India; JA248 <- V. Venkata Ramana

doi: 10.13145/bacdive6163.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Blastochloridaceae
  • genus: Blastochloris
  • species: Blastochloris gulmargensis
  • full scientific name: Blastochloris gulmargensis Venkata Ramana et al. 2011

@ref: 8316

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Hyphomicrobiaceae

genus: Blastochloris

species: Blastochloris gulmargensis

full scientific name: Blastochloris gulmargensis Venkata Ramana et al. 2011

strain designation: JA248

type strain: yes

Physiology and metabolism

oxygen tolerance

  • @ref: 8316
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 8316
  • sample type: yellow–green epilithic biofilm in a cold sulfur spring
  • geographic location: Gulmarg (34.05° N 74.38° E)
  • country: India
  • origin.country: IND
  • continent: Asia
  • latitude: 34.05
  • longitude: 74.38

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Spring
#Environmental#Biofilm
#Condition#Sulfuric

taxonmaps

  • @ref: 69479
  • File name: preview.99_38403.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_355;96_3273;97_4014;98_5120;99_38403&stattab=map
  • Last taxonomy: Blastochloris gulmargensis
  • 16S sequence: AM502287
  • Sequence Identity:
  • Total samples: 57
  • soil counts: 31
  • aquatic counts: 18
  • animal counts: 3
  • plant counts: 5

Safety information

risk assessment

  • @ref: 8316
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 8316
  • description: Blastochloris gulmargensis partial 16S rRNA gene, type strain JA248T
  • accession: AM502287
  • length: 1420
  • database: ena
  • NCBI tax ID: 432296

GC content

  • @ref: 8316
  • GC-content: 63.8
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 8316

culture collection no.: DSM 19786, JCM 14795

literature

  • topic: Phylogeny
  • Pubmed-ID: 20817841
  • title: Blastochloris gulmargensis sp. nov., isolated from an epilithic phototrophic biofilm.
  • authors: Venkata Ramana V, Kapoor S, Shobha E, Ramprasad EVV, Sasikala C, Ramana CV
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.025965-0
  • year: 2010
  • mesh: Alphaproteobacteria/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, *Biofilms, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Geologic Sediments/microbiology, Molecular Sequence Data, Phototrophic Processes, Phylogeny, RNA, Ribosomal, 16S/genetics, Soil Microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
8316Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19786)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19786
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta