version 5.0 (current version)
General
@ref: 5722
BacDive-ID: 6139
DSM-Number: 15129
keywords: Bacteria, 16S sequence, genome sequence, thermophilic
description: Tepidiphilus margaritifer N2-214 is a thermophilic bacterium that was isolated from thermophilic digester of wastewater-treatment sludge.
strain history: <- C. M. Manaia; N2-214
doi: 10.13145/bacdive6139.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/proteobacteria
- domain: Bacteria
- phylum: Proteobacteria
- class: Hydrogenophilalia
- order: Hydrogenophilales
- family: Hydrogenophilaceae
- genus: Tepidiphilus
- species: Tepidiphilus margaritifer
- full scientific name: Tepidiphilus margaritifer Manaia et al. 2003
@ref: 5722
domain: Bacteria
phylum: Proteobacteria
class: Hydrogenophilalia
order: Hydrogenophilales
family: Hydrogenophilaceae
genus: Tepidiphilus
species: Tepidiphilus margaritifer
full scientific name: Tepidiphilus margaritifer Manaia et al. 2003 emend. Poddar et al. 2014
strain designation: N2-214
type strain: yes
Culture and growth conditions
culture medium
- @ref: 5722
- name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium381.pdf
culture temp
- @ref: 5722
- growth: positive
- type: growth
- temperature: 50
- range: thermophilic
Isolation, sampling and environmental information
isolation
- @ref: 5722
- sample type: thermophilic digester of wastewater-treatment sludge
- geographic location: Porto
- country: Portugal
- origin.country: PRT
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Biodegradation | |
| #Engineered | #Waste | #Wastewater |
| #Environmental | #Aquatic | #Mud (Sludge) |
| #Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
- @ref: 5722
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5722
- description: Tepidiphilus margaritifer partial 16S rRNA gene, type strain N2-214T
- accession: AJ504663
- length: 1456
- database: ena
- NCBI tax ID: 1123354
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Tepidiphilus margaritifer DSM 15129 | GCA_000425565 | scaffold | ncbi | 1123354 |
| 66792 | Tepidiphilus margaritifer DSM 15129 | 1123354.4 | wgs | patric | 1123354 |
| 66792 | Tepidiphilus margaritifer DSM 15129 | 2524023151 | permanent | img | 1123354 |
GC content
- @ref: 5722
- GC-content: 64.8
External links
@ref: 5722
culture collection no.: DSM 15129, LMG 21637
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/371478 |
| 20218 | http://www.straininfo.net/strains/277875 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 5722 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15129) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15129 | |||
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |