Strain identifier

BacDive ID: 6138

Type strain: Yes

Species: Tepidiphilus succinatimandens

Strain Designation: 4BON

Culture col. no.: DSM 15512, CIP 107790

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General

@ref: 5970

BacDive-ID: 6138

DSM-Number: 15512

keywords: gram-negative, thermophilic, aerobe, Bacteria, 16S sequence, genome sequence, motile, rod-shaped

description: Tepidiphilus succinatimandens 4BON is an aerobe, thermophilic, gram-negative bacterium that was isolated from oil field.

strain history

doi: 10.13145/bacdive6138.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Hydrogenophilalia
  • order: Hydrogenophilales
  • family: Hydrogenophilaceae
  • genus: Tepidiphilus
  • species: Tepidiphilus succinatimandens
  • full scientific name: Tepidiphilus succinatimandens (Bonilla Salinas et al. 2004) Poddar et al. 2014

  • synonyms

    • @ref: 20215
    • synonym: Petrobacter succinatimandens

@ref: 5970

domain: Bacteria

phylum: Proteobacteria

class: Hydrogenophilalia

order: Hydrogenophilales

family: Hydrogenophilaceae

genus: Tepidiphilus

species: Tepidiphilus succinatimandens

full scientific name: Tepidiphilus succinatimandens (Bonilla Salinas et al. 2004) Poddar et al. 2014

strain designation: 4BON

type strain: yes

Morphology

cell morphology

  • @ref: 29947
  • gram stain: negative
  • cell length: 2 µm
  • cell width: 0.35 µm
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5970PETROBACTER SUCCINIMANDENS MEDIUM (DSMZ Medium 979), aerobic or anaerobicyeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium979.pdf
36204MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
5970positivegrowth55thermophilic
29947positivegrowth35-60
29947positiveoptimum55thermophilic
36204positivegrowth55thermophilic

culture pH

@refabilitytypepH
29947positivegrowth5.5-8
29947positiveoptimum6.9

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
5970aerobe
5970anaerobe
29947aerobe

spore formation

  • @ref: 29947
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
29947NaClpositivegrowth0-3 %
29947NaClpositiveoptimum0.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2994716236ethanol+carbon source
2994715740formate+carbon source
2994715361pyruvate+carbon source
2994730031succinate+carbon source
2994717632nitrate+reduction

enzymes

@refvalueactivityec
29947catalase+1.11.1.6
29947cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 5970
  • sample type: oil field
  • geographic location: Queensland
  • country: Australia
  • origin.country: AUS
  • continent: Australia and Oceania

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Industrial
  • Cat3: #Oil reservoir

Safety information

risk assessment

  • @ref: 5970
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 5970
  • description: Petrobacter succinimandens BON4 16S ribosomal RNA gene, partial sequence
  • accession: AY219713
  • length: 1529
  • database: ena
  • NCBI tax ID: 224436

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Tepidiphilus succinatimandens DSM 15512GCA_006503695scaffoldncbi224436
66792Tepidiphilus succinatimandens strain DSM 15512224436.3wgspatric224436

GC content

  • @ref: 5970
  • GC-content: 58.6

External links

@ref: 5970

culture collection no.: DSM 15512, CIP 107790

straininfo link

@refpassport
20218http://www.straininfo.net/strains/378414
20218http://www.straininfo.net/strains/378413

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
5970Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15512)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15512
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2631610.1099/ijs.0.02732-0
29947Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information26316
36204Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5264
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)