Strain identifier

BacDive ID: 6137

Type strain: Yes

Species: Hydrogenophilus islandicus

Strain Designation: 16C, C16

Strain history: J. Orlygsson 16C.

NCBI tax ID(s): 545536 (species)

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General

@ref: 15708

BacDive-ID: 6137

DSM-Number: 21442

keywords: 16S sequence, Bacteria, aerobe, thermophilic, Gram-negative, motile, rod-shaped

description: Hydrogenophilus islandicus 16C is an aerobe, thermophilic, Gram-negative bacterium that was isolated from hot spring.

NCBI tax id

  • NCBI tax id: 545536
  • Matching level: species

strain history

@refhistory
15708<- J. Örlygsson, Univ. Akureyri, Iceland; 16C
67770J. Orlygsson 16C.

doi: 10.13145/bacdive6137.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Hydrogenophilia
  • order: Hydrogenophilales
  • family: Hydrogenophilaceae
  • genus: Hydrogenophilus
  • species: Hydrogenophilus islandicus
  • full scientific name: Hydrogenophilus islandicus Vésteinsdóttir et al. 2011

@ref: 15708

domain: Bacteria

phylum: Proteobacteria

class: Hydrogenophilalia

order: Hydrogenophilales

family: Hydrogenophilaceae

genus: Hydrogenophilus

species: Hydrogenophilus islandicus

full scientific name: Hydrogenophilus islandicus Vésteinsdóttir et al. 2011

strain designation: 16C, C16

type strain: yes

Morphology

cell morphology

  • @ref: 29875
  • gram stain: negative
  • cell length: 2.6 µm
  • cell width: 0.4 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 29875
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 15708
  • name: MINERAL MEDIUM FOR CHEMOLITHOTROPHIC GROWTH (H-3) (DSMZ Medium 81)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/81
  • composition: Name: MINERAL MEDIUM FOR CHEMOLITHOTROPHIC GROWTH (H-3) (DSMZ Medium 81) Composition: Agar 20.1005 g/l Na2HPO4 x 2 H2O 2.91457 g/l KH2PO4 2.31156 g/l NH4Cl 1.00503 g/l MgSO4 x 7 H2O 0.502512 g/l Ferric ammonium citrate 0.0502513 g/l CaCl2 x 2 H2O 0.0100503 g/l NaVO3 x H2O 0.00502512 g/l Calcium pantothenate 0.00251256 g/l Pyridoxine hydrochloride 0.00251256 g/l Nicotinic acid 0.00251256 g/l Thiamine-HCl x 2 H2O 0.00251256 g/l H3BO3 0.00150754 g/l CoCl2 x 6 H2O 0.00100503 g/l Riboflavin 0.000502513 g/l ZnSO4 x 7 H2O 0.000502513 g/l MnCl2 x 4 H2O 0.000150754 g/l Na2MoO4 x 2 H2O 0.000150754 g/l NiCl2 x 6 H2O 0.000100503 g/l CuCl2 x 2 H2O 5.02513e-05 g/l Vitamin B12 5.02513e-05 g/l Folic acid 1.00503e-05 g/l Biotin 5.02513e-06 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
15708positivegrowth50thermophilic
29875positiveoptimum55thermophilic
67770positivegrowth60thermophilic

culture pH

  • @ref: 29875
  • ability: positive
  • type: optimum
  • pH: 7

Physiology and metabolism

oxygen tolerance

  • @ref: 29875
  • oxygen tolerance: aerobe

spore formation

  • @ref: 29875
  • spore formation: no

observation

@refobservation
29875aggregates in chains
67770quinones: Q-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2987530089acetate+carbon source
2987528757fructose+carbon source
2987517234glucose+carbon source
2987524996lactate+carbon source
2987525115malate+carbon source
2987517272propionate+carbon source
2987515361pyruvate+carbon source

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
15708hot springHveragerdi - GraendalurIcelandISLEurope
67770Hot spring in GraendalurIcelandISLEurope

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Thermal spring
#Condition#Thermophilic (>45°C)

taxonmaps

  • @ref: 69479
  • File name: preview.99_31773.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16099;96_15460;97_18921;98_23590;99_31773&stattab=map
  • Last taxonomy: Hydrogenophilus islandicus subclade
  • 16S sequence: EU625664
  • Sequence Identity:
  • Total samples: 124
  • soil counts: 4
  • aquatic counts: 27
  • animal counts: 92
  • plant counts: 1

Safety information

risk assessment

  • @ref: 15708
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 15708
  • description: Hydrogenophilus islandicus strain 16C 16S ribosomal RNA gene, partial sequence
  • accession: EU625664
  • length: 1493
  • database: ena
  • NCBI tax ID: 545536

GC content

@refGC-contentmethod
1570863.9high performance liquid chromatography (HPLC)
2987563.9

External links

@ref: 15708

culture collection no.: DSM 21442, JCM 16106

straininfo link

  • @ref: 75624
  • straininfo: 406195

literature

  • topic: Phylogeny
  • Pubmed-ID: 20228213
  • title: Hydrogenophilus islandicus sp. nov., a thermophilic hydrogen-oxidizing bacterium isolated from an Icelandic hot spring.
  • authors: Vesteinsdottir H, Reynisdottir DB, Orlygsson J
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.023572-0
  • year: 2010
  • mesh: Bacterial Typing Techniques, Base Composition, Carbon Dioxide/metabolism, DNA, Bacterial/genetics, Fatty Acids/analysis, Heterotrophic Processes, Hot Springs/*microbiology, Hot Temperature, Hydrogen/metabolism, Hydrogen-Ion Concentration, Hydrogenophilaceae/*classification/genetics/isolation & purification, Iceland, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Water Microbiology
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
15708Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21442)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21442
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29875Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2624928776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
75624Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID406195.1StrainInfo: A central database for resolving microbial strain identifiers