Strain identifier

BacDive ID: 6116

Type strain: Yes

Species: Wolinella succinogenes

Strain history: DSM 1740 <-- H. Biebl <-- M. P. Bryant <-- M. J. Wolin.

NCBI tax ID(s): 273121 (strain), 844 (species)

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General

@ref: 895

BacDive-ID: 6116

DSM-Number: 1740

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative

description: Wolinella succinogenes DSM 1740 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from bovine rumen fluid.

NCBI tax id

NCBI tax idMatching level
273121strain
844species

strain history

@refhistory
895<- H. Biebl, Gesellschaft für Biotechnologische Forschung, Göttingen, Germany; <- M. P. Bryant, University of Illinois, Departments of Dairy Science and Microbiology, Urbana, USA; <- M. J. Wolin;
67770DSM 1740 <-- H. Biebl <-- M. P. Bryant <-- M. J. Wolin.

doi: 10.13145/bacdive6116.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Helicobacteraceae
  • genus: Wolinella
  • species: Wolinella succinogenes
  • full scientific name: Wolinella succinogenes (Wolin et al. 1961) Tanner et al. 1981

  • synonyms

    • @ref: 20215
    • synonym: Vibrio succinogenes

@ref: 895

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Helicobacteraceae

genus: Wolinella

species: Wolinella succinogenes

full scientific name: Wolinella succinogenes (Wolin et al. 1961) Tanner et al. 1981

type strain: yes

Morphology

cell morphology

  • @ref: 125438
  • gram stain: negative
  • confidence: 96.977

Culture and growth conditions

culture medium

  • @ref: 895
  • name: WOLINELLA MEDIUM (DSMZ Medium 157)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium157.pdf

culture temp

@refgrowthtypetemperature
895positivegrowth37
67770positivegrowth37

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
895anaerobe
45898anaerobe
125439anaerobe96.8

spore formation

@refspore formationconfidence
125438no93.806
125439no94.3

compound production

  • @ref: 895
  • compound: L asparaginase

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
895bovine rumen fluidIllinois, UrbanaUSAUSANorth America
45898Bovine rumen
67770Bovine rumen fluid

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body-Site#Organ#Rumen

taxonmaps

  • @ref: 69479
  • File name: preview.99_3319.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_36;96_1728;97_2069;98_2544;99_3319&stattab=map
  • Last taxonomy: Wolinella succinogenes subclade
  • 16S sequence: M88159
  • Sequence Identity:
  • Total samples: 2021
  • soil counts: 136
  • aquatic counts: 796
  • animal counts: 1065
  • plant counts: 24

Safety information

risk assessment

  • @ref: 895
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
895Wolinella succinogenes strain ATCC 29543 16S ribosomal RNA, partial sequenceM881591481nuccore844
124043W.succinogenes gene for 16S ribosomal RNA (partial)Z25745907nuccore844

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Wolinella succinogenes DSM 1740 DSMZ 1740GCA_000196135completencbi273121
66792Wolinella succinogenes NCTC11488GCA_900637325completencbi844
66792Wolinella succinogenes DSM 1740273121.8completepatric273121
66792Wolinella succinogenes strain NCTC11488844.5completepatric844
66792Wolinella succinogenes DSM 1740637000341completeimg273121
66792Wolinella succinogenes NCTC114882836966179completeimg844

GC content

@refGC-contentmethod
89549.2
6777046thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno96.977no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)yes65.411yes
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no87.807no
125438spore-formingspore-formingAbility to form endo- or exosporesno93.806no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno87.265yes
125438motile2+flagellatedAbility to perform flagellated movementyes71.817no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno94.3
125439BacteriaNetmotilityAbility to perform movementno61.6
125439BacteriaNetgram_stainReaction to gram-stainingnegative85.2
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthanaerobe96.8

External links

@ref: 895

culture collection no.: DSM 1740, ATCC 29543, JCM 31913, CCUG 13145, CCUG 12550, LMG 7466, CIP 103760, KCTC 5018, LMG 7608, NCTC 11488

straininfo link

  • @ref: 75603
  • straininfo: 13878

literature

topicPubmed-IDtitleauthorsjournalyearmeshtopic2DOI
Enzymology1303324Analysis of cell surface antigens of Campylobacter rectus.Kaneko TBull Tokyo Dent Coll1992Adult, Antibodies, Bacterial/blood, Antibodies, Monoclonal, Antigens, Bacterial/analysis/*immunology, Antigens, Surface/analysis, Campylobacter/*immunology, Electrophoresis, Polyacrylamide Gel, Enzyme-Linked Immunosorbent Assay, Humans, Immunoblotting, Lipopolysaccharides/analysis, Microscopy, Immunoelectron, Middle Aged, Periodontitis/*immunology/*microbiologyPathogenicity
Phylogeny6490858Comparison of strains of gram-negative, anaerobic, agar-corroding rods isolated from soft tissue infections in cats and dogs with type strains of Bacteroides gracilis, Wolinella recta, Wolinella succinogenes, and Campylobacter concisus.Love DN, Jones RF, Bailey M, Calverley AJ Clin Microbiol1984Agar, Animals, Bacteria/classification/*isolation & purification, Bacterial Infections/microbiology/*veterinary, Bacteroides/*isolation & purification, Campylobacter/*isolation & purification, Cat Diseases/*microbiology, Cats, Dog Diseases/*microbiology, DogsEnzymology10.1128/jcm.20.4.747-750.1984
Enzymology6598917Differential characteristics of a small gram-negative anaerobe associated with non-gonococcal urethritis which morphologically resembles Bacteroides ureolyticus.Fontaine EA, Borriello SP, Taylor-Robinson D, Davies HAScand J Urol Nephrol Suppl1984Bacteroides/*isolation & purification, Gram-Negative Anaerobic Bacteria/growth & development/*isolation & purification/ultrastructure, Humans, Male, Urethritis/*microbiologyPhylogeny
16817973Molecular signatures (unique proteins and conserved indels) that are specific for the epsilon proteobacteria (Campylobacterales).Gupta RSBMC Genomics2006Bacterial Proteins/*genetics, Campylobacter/*genetics, Conserved Sequence, Epsilonproteobacteria/genetics, *Open Reading Frames, RNA, Bacterial/genetics, RNA, Ribosomal/genetics10.1186/1471-2164-7-167

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
895Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1740)https://www.dsmz.de/collection/catalogue/details/culture/DSM-1740
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
45898Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 13145)https://www.ccug.se/strain?id=13145
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
75603Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID13878.1StrainInfo: A central database for resolving microbial strain identifiers
124043Isabel Schober, Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1