Strain identifier

BacDive ID: 6108

Type strain: Yes

Species: Helicobacter mastomyrinus

Strain history: <- CCUG <- Z. Shen, Massachusetts Inst. Technology, Cambridge, USA <- S. Xu

NCBI tax ID(s): 287948 (species)

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General

@ref: 16601

BacDive-ID: 6108

DSM-Number: 22886

keywords: 16S sequence, Bacteria, anaerobe, mesophilic, animal pathogen

description: Helicobacter mastomyrinus DSM 22886 is an anaerobe, mesophilic animal pathogen that was isolated from liver or cecum of the African rodent Mastomys natalensis.

NCBI tax id

  • NCBI tax id: 287948
  • Matching level: species

strain history

  • @ref: 16601
  • history: <- CCUG <- Z. Shen, Massachusetts Inst. Technology, Cambridge, USA <- S. Xu

doi: 10.13145/bacdive6108.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Helicobacteraceae
  • genus: Helicobacter
  • species: Helicobacter mastomyrinus
  • full scientific name: Helicobacter mastomyrinus Shen et al. 2006

@ref: 16601

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Helicobacteraceae

genus: Helicobacter

species: Helicobacter mastomyrinus

full scientific name: Helicobacter mastomyrinus Shen et al. 2006

type strain: yes

Morphology

colony morphology

  • @ref: 16601
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

  • @ref: 16601
  • name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/693
  • composition: Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperaturerange
16601positivegrowth37mesophilic
59541positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
16601anaerobe
59541microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837316199urea+hydrolysis
6837378019triphenyltetrazolium chloride-reduction
6837317634D-glucose-assimilation
6837330031succinate-assimilation
6837330089acetate-assimilation
6837317272propionate-assimilation
6837325115malate-assimilation
6837316947citrate-assimilation

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.
6837348923erythromycinyesyes14 µg
68373474053cefazolinyesyes224 µg
68373100147nalidixic acidyesyes84 µg

metabolite production

  • @ref: 68373
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: no

enzymes

@refvalueactivityec
16601catalase+1.11.1.6
16601cytochrome-c oxidase+1.9.3.1
68373catalase+1.11.1.6
68373L-aspartate arylamidase-3.4.11.21
68373L-arginine arylamidase-
68373pyrrolidonyl arylamidase-3.4.19.3
68373gamma-glutamyltransferase-2.3.2.2
68373esterase-
68373urease+3.5.1.5

API CAM

@refURENITESTHIPGGTTTCPYRAArgAAspAPALH2SGLUSUTNALCFZACEPROPMLTCITEROCAT
16601++-+-----+/-----------+
16601++------------------
16601+--------+----------+

Isolation, sampling and environmental information

isolation

@refsample typehost speciessampling dategeographic locationcountryorigin.countrycontinent
16601liver or cecum of the African rodent Mastomys natalensisMastomys natalensis
59541Mastomys liver or cecum (Mastomys natalensis)1997-03-13MA,CambridgeUSAUSANorth America

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Muridae (Mouse/Rat)
#Host Body-Site#Gastrointestinal tract#Large intestine
#Host Body-Site#Organ#Liver

taxonmaps

  • @ref: 69479
  • File name: preview.99_12119.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_36;96_1103;97_7386;98_9106;99_12119&stattab=map
  • Last taxonomy: Helicobacter mastomyrinus subclade
  • 16S sequence: AY742307
  • Sequence Identity:
  • Total samples: 848
  • soil counts: 3
  • animal counts: 844
  • plant counts: 1

Safety information

risk assessment

  • @ref: 16601
  • pathogenicity animal: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16601
  • description: Helicobacter mastomyrinus 16S ribosomal RNA gene, partial sequence
  • accession: AY742307
  • length: 1760
  • database: ena
  • NCBI tax ID: 287948

External links

@ref: 16601

culture collection no.: DSM 22886, ATCC BAA 1046, CCUG 52417, MIT 97-5574

straininfo link

  • @ref: 75595
  • straininfo: 297225

Reference

@idauthorscataloguedoi/urltitle
16601Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22886)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22886
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
59541Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 52417)https://www.ccug.se/strain?id=52417
68373Automatically annotated from API CAM
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
75595Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID297225.1StrainInfo: A central database for resolving microbial strain identifiers