Strain identifier

BacDive ID: 6077

Type strain: Yes

Species: Halomonas vilamensis

Strain Designation: SV325

Strain history: <- J. Menes, Univ. Montevideo, Uruguay; SV325

NCBI tax ID(s): 531309 (species)

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General

@ref: 15513

BacDive-ID: 6077

DSM-Number: 21020

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Halomonas vilamensis SV325 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from sediment of a hypersaline lake.

NCBI tax id

  • NCBI tax id: 531309
  • Matching level: species

strain history

  • @ref: 15513
  • history: <- J. Menes, Univ. Montevideo, Uruguay; SV325

doi: 10.13145/bacdive6077.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Halomonadaceae
  • genus: Halomonas
  • species: Halomonas vilamensis
  • full scientific name: Halomonas vilamensis Menes et al. 2011

  • synonyms

    • @ref: 20215
    • synonym: Vreelandella vilamensis

@ref: 15513

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Halomonadaceae

genus: Halomonas

species: Halomonas vilamensis

full scientific name: Halomonas vilamensis Menes et al. 2011

strain designation: SV325

type strain: yes

Morphology

cell morphology

  • @ref: 29867
  • gram stain: negative
  • cell length: 3 µm
  • cell width: 1.3 µm
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

  • @ref: 15513
  • name: MEDIUM 514 PLUS ADDITIONAL SALT (DSMZ Medium 514b)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514b
  • composition: Name: MEDIUM 514 plus additional salt (DSMZ Medium 514b) Composition: NaCl 19.45 g/l Agar 17.5 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
15513positivegrowth28mesophilic
29867positivegrowth05-40
29867positiveoptimum30mesophilic

culture pH

@refabilitytypepHPH range
29867positivegrowth05-10alkaliphile
29867positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 29867
  • oxygen tolerance: aerobe

spore formation

  • @ref: 29867
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
29867NaClpositivegrowth01-25 %
29867NaClpositiveoptimum7.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2986730089acetate+carbon source
2986716449alanine+carbon source
2986735391aspartate+carbon source
298675291gelatin+carbon source
2986715428glycine+carbon source
2986725115malate+carbon source
2986715792malonate+carbon source
2986726271proline+carbon source
2986730031succinate+carbon source
2986717632nitrate+reduction

enzymes

@refvalueactivityec
29867catalase+1.11.1.6
29867gelatinase+
29867cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 15513
  • sample type: sediment of a hypersaline lake
  • geographic location: Andean Puna desert, Jujuy, Laguna Vilama (22° 35' S 66° 55' W, 4600 m above sea level)
  • country: Argentina
  • origin.country: ARG
  • continent: Middle and South America

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Lake (large)
#Environmental#Aquatic#Sediment
#Condition#Saline

Safety information

risk assessment

  • @ref: 15513
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 15513
  • description: Halomonas vilamensis strain SV325 16S ribosomal RNA gene, partial sequence
  • accession: EU557315
  • length: 1430
  • database: ena
  • NCBI tax ID: 531309

GC content

@refGC-contentmethod
1551355.0high performance liquid chromatography (HPLC)
2986755

External links

@ref: 15513

culture collection no.: DSM 21020, LMG 24332

straininfo link

  • @ref: 75564
  • straininfo: 398158

literature

  • topic: Phylogeny
  • Pubmed-ID: 20584819
  • title: Halomonas vilamensis sp. nov., isolated from high-altitude Andean lakes.
  • authors: Menes RJ, Viera CE, Farias ME, Seufferheld MJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.023150-0
  • year: 2010
  • mesh: Altitude, DNA, Bacterial/genetics, Fatty Acids/metabolism, Fresh Water/*microbiology, Geologic Sediments/*microbiology, Halomonas/*classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sodium Chloride/metabolism
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
15513Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21020)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21020
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29867Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2624128776041
75564Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID398158.1StrainInfo: A central database for resolving microbial strain identifiers