Strain identifier

BacDive ID: 6068

Type strain: Yes

Species: Halomonas nitroreducens

Strain Designation: 11S

Strain history: <- CECT <- C. Gonzales; 11S

NCBI tax ID(s): 447425 (species)

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General

@ref: 17209

BacDive-ID: 6068

DSM-Number: 23437

keywords: genome sequence, 16S sequence, Bacteria, facultative aerobe, mesophilic, Gram-negative, rod-shaped

description: Halomonas nitroreducens 11S is a facultative aerobe, mesophilic, Gram-negative bacterium that was isolated from solar saltern.

NCBI tax id

  • NCBI tax id: 447425
  • Matching level: species

strain history

  • @ref: 17209
  • history: <- CECT <- C. Gonzales; 11S

doi: 10.13145/bacdive6068.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Halomonadaceae
  • genus: Halomonas
  • species: Halomonas nitroreducens
  • full scientific name: Halomonas nitroreducens González-Domenech et al. 2008

@ref: 17209

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Halomonadaceae

genus: Halomonas

species: Halomonas nitroreducens

full scientific name: Halomonas nitroreducens González-Domenech et al. 2008

strain designation: 11S

type strain: yes

Morphology

cell morphology

  • @ref: 32386
  • gram stain: negative
  • cell length: 1.85 µm
  • cell width: 0.45 µm
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

  • @ref: 17209
  • name: MEDIUM 514 PLUS ADDITIONAL SALT (DSMZ Medium 514b)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514b
  • composition: Name: MEDIUM 514 plus additional salt (DSMZ Medium 514b; with strain-specific modifications) Composition: NaCl 30.0 g/l Agar 17.5 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
17209positivegrowth37mesophilic
32386positivegrowth04-45
32386positiveoptimum26mesophilic

culture pH

@refabilitytypepHPH range
32386positivegrowth05-10alkaliphile
32386positiveoptimum8

Physiology and metabolism

oxygen tolerance

  • @ref: 32386
  • oxygen tolerance: facultative aerobe

spore formation

  • @ref: 32386
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
32386NaClpositivegrowth03-20 %
32386NaClpositiveoptimum6.25 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3238630089acetate+carbon source
3238616947citrate+carbon source
3238616236ethanol+carbon source
3238628757fructose+carbon source
3238628260galactose+carbon source
3238624265gluconate+carbon source
3238617234glucose+carbon source
3238617754glycerol+carbon source
3238624996lactate+carbon source
3238617716lactose+carbon source
3238617306maltose+carbon source
3238629864mannitol+carbon source
3238637684mannose+carbon source
3238617272propionate+carbon source
3238630911sorbitol+carbon source
3238630031succinate+carbon source
3238627082trehalose+carbon source
3238617632nitrate+reduction

metabolite production

  • @ref: 32386
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: yes

enzymes

@refvalueactivityec
32386catalase+1.11.1.6
32386gelatinase+
32386cytochrome oxidase+1.9.3.1
32386urease+3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 17209
  • sample type: solar saltern
  • geographic location: Cahuil
  • country: Chile
  • origin.country: CHL
  • continent: Middle and South America

isolation source categories

  • Cat1: #Condition
  • Cat2: #Saline

Safety information

risk assessment

  • @ref: 17209
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17209
  • description: Halomonas nitroreducens strain 11S 16S ribosomal RNA gene, partial sequence
  • accession: EF613113
  • length: 1441
  • database: ena
  • NCBI tax ID: 447425

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Halomonas nitroreducens 11SGCA_003966155contigncbi447425
66792Halomonas nitroreducens 11S2902691746draftimg447425

GC content

  • @ref: 32386
  • GC-content: 65.3

External links

@ref: 17209

culture collection no.: DSM 23437, CECT 7281, LMG 24185

straininfo link

  • @ref: 75555
  • straininfo: 308838

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18398185Halomonas nitroreducens sp. nov., a novel nitrate- and nitrite-reducing species.Gonzalez-Domenech CM, Bejar V, Martinez-Checa F, Quesada EInt J Syst Evol Microbiol10.1099/ijs.0.65415-02008Base Composition, Chile, DNA, Bacterial/chemistry/genetics, Genes, Bacterial, Halomonas/*classification/genetics/*metabolism, Microscopy, Electron, Transmission, Molecular Sequence Data, Nitrates/metabolism, Nitrites/metabolism, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Seawater/microbiology, Sequence Homology, Nucleic Acid, Species Specificity, Terminology as TopicMetabolism
Phylogeny21112990Halomonas stenophila sp. nov., a halophilic bacterium that produces sulphate exopolysaccharides with biological activity.Llamas I, Bejar V, Martinez-Checa F, Martinez-Canovas MJ, Molina I, Quesada EInt J Syst Evol Microbiol10.1099/ijs.0.026369-02010Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, rRNA, Halomonas/*classification/genetics/*isolation & purification/metabolism, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Polysaccharides, Bacterial/*metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, Soil Microbiology, Sulfates/*metabolism, TemperatureMetabolism
Phylogeny22328606Halomonas smyrnensis sp. nov., a moderately halophilic, exopolysaccharide-producing bacterium.Poli A, Nicolaus B, Denizci AA, Yavuzturk B, Kazan DInt J Syst Evol Microbiol10.1099/ijs.0.037036-02012Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Halomonas/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Polysaccharides, Bacterial/*biosynthesis, Ponds, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Turkey, Ubiquinone/analysisGenetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
17209Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23437)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23437
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32386Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2861128776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
75555Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID308838.1StrainInfo: A central database for resolving microbial strain identifiers