Strain identifier
BacDive ID: 6061
Type strain:
Species: Halomonas alkaliphila
Strain Designation: 18bAG
Strain history: <- I. Romano, Istituto di Chimica Biomolecolare, Pozzuoli, Napoli; 18bAG
NCBI tax ID(s): 272774 (species)
General
@ref: 6398
BacDive-ID: 6061
DSM-Number: 16354
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Halomonas alkaliphila 18bAG is a mesophilic bacterium that was isolated from salt pool, algal mat.
NCBI tax id
- NCBI tax id: 272774
- Matching level: species
strain history
- @ref: 6398
- history: <- I. Romano, Istituto di Chimica Biomolecolare, Pozzuoli, Napoli; 18bAG
doi: 10.13145/bacdive6061.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Oceanospirillales
- family: Halomonadaceae
- genus: Halomonas
- species: Halomonas alkaliphila
- full scientific name: Halomonas alkaliphila Romano et al. 2007
synonyms
- @ref: 20215
- synonym: Vreelandella alkaliphila
@ref: 6398
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Halomonadaceae
genus: Halomonas
species: Halomonas alkaliphila
full scientific name: Halomonas alkaliphila Romano et al. 2007
strain designation: 18bAG
type strain: yes
Culture and growth conditions
culture medium
- @ref: 6398
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 60.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 6398
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 6398
- sample type: salt pool, algal mat
- geographic location: Campania, Montefredane
- country: Italy
- origin.country: ITA
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Built environment | #Water reservoir (Aquarium/pool) |
#Environmental | #Microbial community | #Microbial mat |
#Host | #Algae | |
#Condition | #Saline |
taxonmaps
- @ref: 69479
- File name: preview.99_1803.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_48;96_104;97_111;98_1425;99_1803&stattab=map
- Last taxonomy: Halomonas
- 16S sequence: AJ640133
- Sequence Identity:
- Total samples: 78
- soil counts: 3
- aquatic counts: 62
- animal counts: 12
- plant counts: 1
Safety information
risk assessment
- @ref: 6398
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 6398
- description: Halomonas alkaliphila partial 16S rRNA gene, type strain 18bAGT
- accession: AJ640133
- length: 1500
- database: ena
- NCBI tax ID: 272774
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Halomonas alkaliphila DSM 16354 | GCA_016107625 | contig | ncbi | 272774 |
66792 | Halomonas alkaliphila strain DSM 16354 | 272774.6 | wgs | patric | 272774 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 93.809 | no |
gram-positive | no | 98.705 | no |
anaerobic | no | 97.696 | no |
halophile | yes | 91.602 | no |
spore-forming | no | 95.558 | no |
glucose-util | yes | 93.296 | no |
flagellated | yes | 79.936 | no |
aerobic | yes | 90.481 | no |
thermophile | no | 98.979 | yes |
glucose-ferment | no | 72.529 | no |
External links
@ref: 6398
culture collection no.: DSM 16354, ATCC BAA 953
straininfo link
- @ref: 75548
- straininfo: 201366
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 17325447 | Halomonas alkaliphila sp. nov., a novel halotolerant alkaliphilic bacterium isolated from a salt pool in Campania (Italy). | Romano I, Lama L, Nicolaus B, Poli A, Gambacorta A, Giordano A | J Gen Appl Microbiol | 10.2323/jgam.52.339 | 2006 | Aerobiosis, Alkalies/chemistry, Base Composition, Base Sequence, Carbohydrate Metabolism, DNA, Ribosomal/analysis, Halomonas/*classification/genetics/*isolation & purification, Hydrogen-Ion Concentration, Hydroxybutyrates/metabolism, Italy, Molecular Sequence Data, Phylogeny, Polysaccharides, Bacterial/metabolism, RNA, Ribosomal, 16S/genetics, Salts/toxicity, *Water Microbiology | Metabolism |
Phylogeny | 23877893 | Halomonas zhaodongensis sp. nov., a slightly halophilic bacterium isolated from saline-alkaline soils in Zhaodong, China. | Jiang J, Pan Y, Meng L, Hu S, Zhang X, Hu B, Meng J, Li C, Huang H, Wang K, Su T | Antonie Van Leeuwenhoek | 10.1007/s10482-013-9976-3 | 2013 | Aerobiosis, Bacterial Typing Techniques, Base Composition, Biopolymers/metabolism, China, Cluster Analysis, DNA Gyrase/genetics, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA-Directed RNA Polymerases/genetics, Fatty Acids/analysis, Halomonas/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sigma Factor/genetics, Sodium Chloride/metabolism, Soil Microbiology, Temperature | Metabolism |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
6398 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16354) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16354 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
75548 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID201366.1 | StrainInfo: A central database for resolving microbial strain identifiers |