Strain identifier

BacDive ID: 6061

Type strain: Yes

Species: Halomonas alkaliphila

Strain Designation: 18bAG

Strain history: <- I. Romano, Istituto di Chimica Biomolecolare, Pozzuoli, Napoli; 18bAG

NCBI tax ID(s): 272774 (species)

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General

@ref: 6398

BacDive-ID: 6061

DSM-Number: 16354

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Halomonas alkaliphila 18bAG is a mesophilic bacterium that was isolated from salt pool, algal mat.

NCBI tax id

  • NCBI tax id: 272774
  • Matching level: species

strain history

  • @ref: 6398
  • history: <- I. Romano, Istituto di Chimica Biomolecolare, Pozzuoli, Napoli; 18bAG

doi: 10.13145/bacdive6061.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Halomonadaceae
  • genus: Halomonas
  • species: Halomonas alkaliphila
  • full scientific name: Halomonas alkaliphila Romano et al. 2007
  • synonyms

    • @ref: 20215
    • synonym: Vreelandella alkaliphila

@ref: 6398

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Halomonadaceae

genus: Halomonas

species: Halomonas alkaliphila

full scientific name: Halomonas alkaliphila Romano et al. 2007

strain designation: 18bAG

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 6398
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 60.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

  • @ref: 6398
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 6398
  • sample type: salt pool, algal mat
  • geographic location: Campania, Montefredane
  • country: Italy
  • origin.country: ITA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Built environment#Water reservoir (Aquarium/pool)
#Environmental#Microbial community#Microbial mat
#Host#Algae
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_1803.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_48;96_104;97_111;98_1425;99_1803&stattab=map
  • Last taxonomy: Halomonas
  • 16S sequence: AJ640133
  • Sequence Identity:
  • Total samples: 78
  • soil counts: 3
  • aquatic counts: 62
  • animal counts: 12
  • plant counts: 1

Safety information

risk assessment

  • @ref: 6398
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6398
  • description: Halomonas alkaliphila partial 16S rRNA gene, type strain 18bAGT
  • accession: AJ640133
  • length: 1500
  • database: ena
  • NCBI tax ID: 272774

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Halomonas alkaliphila DSM 16354GCA_016107625contigncbi272774
66792Halomonas alkaliphila strain DSM 16354272774.6wgspatric272774

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes93.809no
gram-positiveno98.705no
anaerobicno97.696no
halophileyes91.602no
spore-formingno95.558no
glucose-utilyes93.296no
flagellatedyes79.936no
aerobicyes90.481no
thermophileno98.979yes
glucose-fermentno72.529no

External links

@ref: 6398

culture collection no.: DSM 16354, ATCC BAA 953

straininfo link

  • @ref: 75548
  • straininfo: 201366

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17325447Halomonas alkaliphila sp. nov., a novel halotolerant alkaliphilic bacterium isolated from a salt pool in Campania (Italy).Romano I, Lama L, Nicolaus B, Poli A, Gambacorta A, Giordano AJ Gen Appl Microbiol10.2323/jgam.52.3392006Aerobiosis, Alkalies/chemistry, Base Composition, Base Sequence, Carbohydrate Metabolism, DNA, Ribosomal/analysis, Halomonas/*classification/genetics/*isolation & purification, Hydrogen-Ion Concentration, Hydroxybutyrates/metabolism, Italy, Molecular Sequence Data, Phylogeny, Polysaccharides, Bacterial/metabolism, RNA, Ribosomal, 16S/genetics, Salts/toxicity, *Water MicrobiologyMetabolism
Phylogeny23877893Halomonas zhaodongensis sp. nov., a slightly halophilic bacterium isolated from saline-alkaline soils in Zhaodong, China.Jiang J, Pan Y, Meng L, Hu S, Zhang X, Hu B, Meng J, Li C, Huang H, Wang K, Su TAntonie Van Leeuwenhoek10.1007/s10482-013-9976-32013Aerobiosis, Bacterial Typing Techniques, Base Composition, Biopolymers/metabolism, China, Cluster Analysis, DNA Gyrase/genetics, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA-Directed RNA Polymerases/genetics, Fatty Acids/analysis, Halomonas/*classification/genetics/*isolation & purification/physiology, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sigma Factor/genetics, Sodium Chloride/metabolism, Soil Microbiology, TemperatureMetabolism

Reference

@idauthorscataloguedoi/urltitle
6398Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16354)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16354
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
75548Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID201366.1StrainInfo: A central database for resolving microbial strain identifiers